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[183346_at] 7TM chemoreceptor, srx family

Description T01C4.5 /REP_DB=WormBase Gene ID /WP=CE12936 /TR=Q94297 /GB=AAB09180.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 11      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 13.1
(0)
A 		1.6
(-3)
A 		4.5
(-2.2)
A 		24.3
(3)
A 		23
B 13.4
(-2)
A 		17.2
(-1.6)
A 		4.3
(-3)
A 		60.2
(3)
P 		56
C 3.1
(-3)
A 		14.4
(-2.2)
A 		2.7
(-3)
A 		92
(3)
A 		89
avr 9.9
(-2.3) 		11.1
(-2.2) 		3.8
(-3) 		58.8
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 5
(-2.2)
A 		2.3
(-2.8)
A 		26.4
(3)
A 		1.6
(-3)
A 		3
(-2.6)
A 		1.5
(-3)
A 		25
B 0.9
(-3)
A 		5.3
(-2)
A 		28
(3)
A 		17.1
(0.6)
A 		12.4
(-0.5)
A 		12.6
(-0.4)
A 		27
C 5.1
(-2.5)
A 		51.3
(3)
P 		10.4
(-1.8)
A 		1.9
(-2.9)
A 		3.1
(-2.7)
A 		0.7
(-3)
A 		51
avr 3.7
(-3) 		19.6
(2.3) 		21.6
(3) 		6.9
(-1.9) 		6.2
(-2.2) 		4.9
(-2.6) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.8
(3)
A 		0.3
(-3)
A 		1.2
(-1.8)
A 		3.5
(1.3)
A 		5
B 4.3
(-1.3)
A 		4.2
(-1.4)
A 		1
(-3)
A 		12.8
(3)
P 		12
C 1
(-3)
A 		4.1
(-1.7)
A 		0.9
(-3)
A 		15.5
(3)
A 		15
avr 3.4
(-1.5) 		2.9
(-1.8) 		1
(-3) 		10.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.9
(-2.4)
A 		0.8
(-2.6)
A 		5.8
(3)
A 		0.4
(-3)
A 		0.9
(-2.4)
A 		0.4
(-3)
A 		5
B 0.3
(-3)
A 		1.8
(-1.6)
A 		6.8
(3)
A 		4.5
(0.9)
A 		5
(1.3)
A 		4.7
(1.1)
A 		7
C 1.9
(-2.3)
A 		15.7
(3)
P 		2.7
(-2)
A 		0.4
(-2.9)
A 		1
(-2.7)
A 		0.2
(-3)
A 		16
avr 1
(-3) 		6.1
(3) 		5.1
(1.8) 		1.8
(-2.1) 		2.3
(-1.5) 		1.8
(-2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183346_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11966
Sequence Type Exemplar sequence
Representative Public ID T01C4.5 NCBI
Target Description T01C4.5 /REP_DB=WormBase Gene ID /WP=CE12936 /TR=Q94297 /GB=AAB09180.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072404(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072404 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-35) (srx-35) mRNA, complete cds. 9/11 None
T01C4.5 ENSEMBL cdna:known chromosome:CEL140:V:7123309:7125087:-1 gene:T01C4.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016308 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7123309-7124763(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-35
Ensembl T01C4.5
Entrez Gene 187945 Entrez gene
SwissProt Q94297 EMBL-EBI
WormBase CE38098 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504805 Serpentine Receptor, class X family member (srx-35) [Caenorhabditis elegans] gb|AAB09180.2| Serpentine receptor, class x protein 35 [Caenorhabditis elegans] 1.0E-170
blast NP_504807 Serpentine Receptor, class X family member (srx-36) [Caenorhabditis elegans] gb|AAB09181.2| Serpentine receptor, class x protein 36 [Caenorhabditis elegans] 4.0E-80
blast CAE72007 Hypothetical protein CBG19086 [Caenorhabditis briggsae] 8.0E-76
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504805.2 7 5-27,48-67,77-99,119-141,173-195,216-238,248-270
T01C4.5 7 5-27,48-67,77-99,119-141,173-195,216-238,248-270
Sequence
Target Sequence 
>C. ELEGANS:183346_AT
atgacggagcaatgcaggcccatgcattgattactgtactttttaataatgaaaagggaa
aattgaatcacacagatccatgtcgttattacttttccgatgtctcactaggtttcactt
ttaatatggaagtacccatatgttttgactatggaatttacggtgattttgggaaattct
tcattttatgcatgttcaatattgtggttgacaccatttcaatttggaaagttagaaaaa
ttagaagattgcaagggcaactcacgtttcagaaaaaggaaataaatcttttgaaacagt
cgtttggacaagctatttacctttttatctacattcctgtttattttaccatcccaatga
tagtccacaatgatgtgatcggatttttgttgagcacgttctactggtcttctattcatg
caatggatggcattttaactcttgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACGGAGCAATGCAGGCCCATGC 73 45 59 Antisense
AGGCCCATGCATTGATTACTGTACT 678 53 74 Antisense
GAATCACACAGATCCATGTCGTTAT 528 327 123 Antisense
GTTATTACTTTTCCGATGTCTCACT 678 447 143 Antisense
GATGTCTCACTAGGTTTCACTTTTA 239 409 157 Antisense
TTGCAAGGGCAACTCACGTTTCAGA 390 699 307 Antisense
ATTTACCTTTTTATCTACATTCCTG 24 17 373 Antisense
CATTCCTGTTTATTTTACCATCCCA 525 217 390 Antisense
GGATTTTTGTTGAGCACGTTCTACT 145 509 439 Antisense
GTTCTACTGGTCTTCTATTCATGCA 485 443 456 Antisense
TGGATGGCATTTTAACTCTTGTTTT 368 549 482 Antisense
Sequence Source Affymetrix Proprietary Database