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[183344_at]

Description R09B5.5 /REP_DB=WormBase Gene ID /WP=CE12626 /TR=O44606 /GB=AAB94214.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      6grp_total > 88      4grp_total > 48      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1159
1 2 3 4 range
A 41.8
(-2.9)
P 		764.2
(0.8)
P 		1181.7
(3)
P 		22.5
(-3)
A 		1159
B 67.1
(-3)
P 		645.8
(0.5)
P 		1077.5
(3)
P 		59.6
(-3)
A 		1018
C 69.9
(-3)
P 		653.9
(0.5)
P 		1071.4
(3)
P 		71.3
(-3)
A 		1002
avr 59.6
(-3) 		688
(0.6) 		1110.2
(3) 		51.1
(-3) 		1059

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1007
1 2 3 4 5 6 range
A 99.6
(-3)
A 		471.2
(-0.7)
P 		277
(-1.9)
P 		350.3
(-1.4)
P 		602.5
(0.1)
P 		1063.1
(3)
P 		964
B 56.4
(-3)
P 		442.3
(0.2)
P 		276.3
(-1.2)
P 		416.7
(0)
P 		533.4
(1)
P 		774.9
(3)
P 		719
C 65.9
(-3)
M 		465.9
(1.2)
P 		351
(-0)
P 		337.6
(-0.1)
P 		637.1
(3)
P 		631.6
(2.9)
P 		571
avr 74
(-3) 		459.8
(0.1) 		301.4
(-1.2) 		368.2
(-0.6) 		591
(1.1) 		823.2
(3) 		749
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 370
1 2 3 4 range
A 15.2
(-2.8)
P 		165.9
(0.2)
P 		308.9
(3)
P 		3.3
(-3)
A 		306
B 21.4
(-2.8)
P 		159.5
(0.7)
P 		249.7
(3)
P 		12.7
(-3)
A 		237
C 23.1
(-2.8)
P 		188
(-0.1)
P 		373.4
(3)
P 		12
(-3)
A 		361
avr 19.9
(-2.8) 		171.1
(0.2) 		310.7
(3) 		9.3
(-3) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 18.4
(-3)
A 		167.6
(0.7)
P 		60.3
(-2)
P 		88.8
(-1.2)
P 		181.8
(1.1)
P 		258.8
(3)
P 		240
B 19.6
(-3)
P 		147.2
(-0.2)
P 		67.1
(-1.9)
P 		110.4
(-1)
P 		216.7
(1.4)
P 		288.9
(3)
P 		269
C 24.4
(-3)
M 		142.2
(0.8)
P 		89.3
(-0.9)
P 		67.9
(-1.6)
P 		206.1
(2.8)
P 		211.4
(3)
P 		187
avr 20.8
(-3) 		152.3
(0.4) 		72.2
(-1.7) 		89
(-1.2) 		201.5
(1.7) 		253
(3) 		232
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15848
Sequence Type Exemplar sequence
Representative Public ID R09B5.5 NCBI
Target Description R09B5.5 /REP_DB=WormBase Gene ID /WP=CE12626 /TR=O44606 /GB=AAB94214.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071022(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071022 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-54) (pqn-54) mRNA, complete cds. 11/11 None
SNAP00000025913 ENSEMBL cdna:SNAP chromosome:CEL140:V:1464843:1466103:1 11/11 None
GENEFINDER00000025923 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1464843:1466103:1 11/11 None
R09B5.5 ENSEMBL cdna:known chromosome:CEL140:V:1464843:1466103:1 gene:R09B5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1464842-1466103(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-54
Ensembl R09B5.5
Entrez Gene 187728 Entrez gene
SwissProt O44606 EMBL-EBI
WormBase CE12626 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503423 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-54) [Caenorhabditis elegans] gb|AAB94214.1| Prion-like-(q/n-rich)-domain-bearing protein protein 54 [Caenorhabditis elegans] 2.0E-45
blast AAB66001 Prion-like-(q/n-rich)-domain-bearing protein protein 5 [Caenorhabditis elegans] ref|NP_504382.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-5) [Caenorhabditis elegans] 4.0E-28
blast AAB65996 Activated in blocked unfolded protein response protein 6 [Caenorhabditis elegans] ref|NP_504383.1| Activated in Blocked Unfolded protein response family member (abu-6) [Caenorhabditis elegans] 1.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 4.9E-33
Sequence
Target Sequence 
>C. ELEGANS:183344_AT
aacagccagctaaccagtgcaattcggcttgtaacagccagtgctccaacatttgccaac
aaactgctcaagccactcaacaggtctacaaccagaactctaacaccaacacccaaatgt
acaatccatacaacaacaacaaccaaggttccggatccgccaactgcgccccagcctgcc
agccagcctgtgacaactcctgcacttctcagactccagctccaatgtacaacccatacg
atgccagcacatccgccccagcatcttcccaagctgtgatccaaatcgttctccaatcct
ccgtcgcccagtcctcccagtgtactccacaatgcgagcagtcgtgccagcagcaatgcg
ttcagcaacaacaaccagccgctcagtgccagtctgcctgccaggactcgtgctccagct
cctgccaagccgctcagccagcgactacggcttgccagcagagcccacaaagcccacaaa
actcgtgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGCCAGCTAACCAGTGCAATTC 219 137 635 Antisense
AACCAGTGCAATTCGGCTTGTAACA 457 145 646 Antisense
GCTTGTAACAGCCAGTGCTCCAACA 702 303 661 Antisense
GTGCTCCAACATTTGCCAACAAACT 468 479 675 Antisense
GTCTACAACCAGAACTCTAACACCA 672 469 718 Antisense
CCCAGCATCTTCCCAAGCTGTGATC 263 259 891 Antisense
TCTTCCCAAGCTGTGATCCAAATCG 162 615 898 Antisense
TGTGATCCAAATCGTTCTCCAATCC 33 557 909 Antisense
TGTACTCCACAATGCGAGCAGTCGT 341 559 955 Antisense
ACAATGCGAGCAGTCGTGCCAGCAG 457 113 963 Antisense
CACAAAGCCCACAAAACTCGTGCTC 565 193 1100 Antisense
Sequence Source Affymetrix Proprietary Database