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[183342_at]

Description C08A9.8 /REP_DB=WormBase Gene ID /WP=CE06790 /TR=Q17811 /GB=AAB53820.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 10.8
(-2.9)
A 		9.9
(-3)
A 		36.5
(0.9)
A 		51.1
(3)
A 		41
B 33.9
(1.3)
A 		27.5
(-2.4)
A 		36.9
(3)
A 		26.4
(-3)
A 		11
C 33.5
(0.4)
A 		11.4
(-3)
A 		12.2
(-2.9)
A 		50.4
(3)
A 		39
avr 26.1
(-0.8) 		16.3
(-3) 		28.5
(-0.2) 		42.6
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 41.5
(2.9)
A 		36.9
(2.1)
A 		42.1
(3)
A 		39.8
(2.6)
A 		8.1
(-3)
A 		16.3
(-1.6)
A 		34
B 44.4
(0.3)
A 		61
(3)
A 		44.6
(0.3)
A 		34.1
(-1.4)
A 		47.6
(0.8)
A 		24.6
(-3)
A 		36
C 54.7
(2.5)
A 		59
(3)
A 		24.4
(-1.4)
A 		47
(1.5)
A 		44.2
(1.1)
A 		11.5
(-3)
A 		48
avr 46.9
(2.1) 		52.3
(3) 		37
(0.4) 		40.3
(0.9) 		33.3
(-0.3) 		17.5
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.9
(-1.5)
A 		2.1
(-3)
A 		9.5
(3)
A 		7.5
(1.4)
A 		7
B 10.8
(3)
A 		6.8
(-1.6)
A 		8.6
(0.5)
A 		5.6
(-3)
A 		5
C 11.1
(3)
A 		3.3
(-3)
A 		4.2
(-2.3)
A 		8.5
(1)
A 		8
avr 8.6
(3) 		4.1
(-3) 		7.4
(1.4) 		7.2
(1.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.7
(-0)
A 		13.1
(3)
A 		9.2
(0.8)
A 		10.1
(1.3)
A 		2.4
(-3)
A 		4
(-2.1)
A 		11
B 15.5
(0.5)
A 		20.3
(3)
A 		10.8
(-2)
A 		9
(-3)
A 		19.3
(2.5)
A 		9.2
(-2.9)
A 		11
C 20.3
(3)
A 		18
(2.2)
A 		6.2
(-2.2)
A 		9.5
(-1)
A 		14.3
(0.8)
A 		3.9
(-3)
A 		16
avr 14.5
(1.6) 		17.1
(3) 		8.7
(-1.4) 		9.5
(-1) 		12
(0.3) 		5.7
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17306
Sequence Type Exemplar sequence
Representative Public ID C08A9.8 NCBI
Target Description C08A9.8 /REP_DB=WormBase Gene ID /WP=CE06790 /TR=Q17811 /GB=AAB53820.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078366(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078366 NCBI Caenorhabditis elegans C08A9.8 (C08A9.8) mRNA, complete cds. 11/11 None
SNAP00000037426 ENSEMBL cdna:SNAP chromosome:CEL140:X:17102277:17104107:-1 11/11 None
GENEFINDER00000037435 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17102757:17104783:-1 11/11 None
C08A9.8 ENSEMBL cdna:known chromosome:CEL140:X:17102757:17104783:-1 gene:C08A9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17102756-17104783(-) 100.0 100.0
chrX:17094403-17096449(-) 92.1 92.1
Public Domain and Genome References
Gene Title
Ensembl C08A9.8
Entrez Gene 182386 Entrez gene
SwissProt Q17811 EMBL-EBI
WormBase CE06790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53820 Hypothetical protein C08A9.8 [Caenorhabditis elegans] ref|NP_510767.1| C08A9.8 [Caenorhabditis elegans] 0.0
blast AAB53820 Hypothetical protein C08A9.8 [Caenorhabditis elegans] ref|NP_510767.1| C08A9.8 [Caenorhabditis elegans] 1.0E-136
blast AAB53820 Hypothetical protein C08A9.8 [Caenorhabditis elegans] ref|NP_510767.1| C08A9.8 [Caenorhabditis elegans] 1.0E-132
blast AAB53814 Hypothetical protein C08A9.6 [Caenorhabditis elegans] ref|NP_510765.1| C08A9.6 [Caenorhabditis elegans] 1.0E-131
blast AAB53814 Hypothetical protein C08A9.6 [Caenorhabditis elegans] ref|NP_510765.1| C08A9.6 [Caenorhabditis elegans] 1.0E-113
blast AAB53814 Hypothetical protein C08A9.6 [Caenorhabditis elegans] ref|NP_510765.1| C08A9.6 [Caenorhabditis elegans] 1.0E-110
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 2.0E-46
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 3.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 4.2E-10
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183342_AT
tggaaatgggagttttaccgccacttcatctattaccgtgagacgctaggacacttagag
gcaaaacttcgaggcgagccctgggatggagaaactcaaaatgacgacgacgaggatgat
attatttacgagggatattgggaagccgataaaaacagcaaccaaacagctgagccccaa
gacagtgttgatgaaactatagcggaggaggtgccacgtgagccatatacaaatactttt
gaacgcgaagaagaagtcgtcaatattaaaagaccagaagcatttgcaagagctgttgat
aatgattttggaccacatacgcaacaattgccagactcatcagcaagaagctattcagca
aatattaaatccgattcatgcgcactggagagcacggaagcaccgaaaagcgacaacagt
gctcagcacattggagaacaagtcgatcggctttttgctcaatacccggaacgttcgaag
ctgttcagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAATGGGAGTTTTACCGCCACT 625 545 589 Antisense
GGACACTTAGAGGCAAAACTTCGAG 600 525 637 Antisense
ACAGCAACCAAACAGCTGAGCCCCA 512 107 743 Antisense
AGCTGAGCCCCAAGACAGTGTTGAT 106 81 756 Antisense
ACTATAGCGGAGGAGGTGCCACGTG 203 103 784 Antisense
GAGGTGCCACGTGAGCCATATACAA 706 401 796 Antisense
GATTTTGGACCACATACGCAACAAT 638 429 892 Antisense
TACGCAACAATTGCCAGACTCATCA 383 649 906 Antisense
ATTAAATCCGATTCATGCGCACTGG 185 13 952 Antisense
TGCGCACTGGAGAGCACGGAAGCAC 180 583 967 Antisense
CCGGAACGTTCGAAGCTGTTCAGAG 305 265 1054 Antisense
Sequence Source Affymetrix Proprietary Database