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[183341_at]

Description T23G11.1 /REP_DB=WormBase Gene ID /WP=CE14092 /TR=Q9XVI1 /GB=CAB03413.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 9.2
(-2.2)
A 		46.5
(3)
A 		15.4
(-1.3)
A 		3.3
(-3)
A 		43
B 4.3
(-3)
A 		13.6
(3)
A 		8.2
(-0.5)
A 		11
(1.3)
A 		9
C 8.1
(-3)
A 		28.1
(3)
A 		23.5
(1.6)
A 		8.5
(-2.9)
A 		20
avr 7.2
(-3) 		29.4
(3) 		15.7
(-0.7) 		7.6
(-2.9) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 654
1 2 3 4 5 6 range
A 2.7
(-3)
A 		6.1
(-3)
A 		29.5
(-2.8)
A 		79.1
(-2.3)
M 		421.3
(0.8)
P 		656.4
(3)
P 		654
B 6.8
(-3)
A 		2.1
(-3)
A 		16.3
(-2.8)
A 		74.1
(-2.2)
A 		503.8
(2.3)
P 		566.6
(3)
P 		565
C 7
(-3)
A 		5.1
(-3)
A 		7.6
(-3)
A 		89.6
(-2)
A 		438.9
(2.3)
P 		499.5
(3)
P 		494
avr 5.5
(-3) 		4.4
(-3) 		17.8
(-2.9) 		80.9
(-2.2) 		454.7
(1.7) 		574.2
(3) 		570
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.4
(-1.2)
A 		10.1
(3)
A 		4
(-0.8)
A 		0.5
(-3)
A 		10
B 1.4
(-3)
A 		3.3
(3)
A 		1.9
(-1.4)
A 		2.3
(-0.2)
A 		2
C 2.7
(-1.9)
A 		8.1
(2.9)
A 		8.2
(3)
A 		1.4
(-3)
A 		7
avr 2.5
(-1.9) 		7.2
(3) 		4.7
(0.4) 		1.4
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.2
(-2.9)
A 		6.4
(-2.8)
A 		20.1
(-2.3)
M 		127.1
(1.8)
P 		159.8
(3)
P 		159
B 2.4
(-3)
A 		0.7
(-3)
A 		4
(-2.9)
A 		19.6
(-2.5)
A 		204.7
(2.8)
P 		211.3
(3)
P 		211
C 2.6
(-3)
A 		1.6
(-3)
A 		1.9
(-3)
A 		18
(-2.4)
A 		142
(2.1)
P 		167.2
(3)
P 		166
avr 1.8
(-3) 		1.5
(-3) 		4.1
(-2.9) 		19.2
(-2.4) 		157.9
(2.3) 		179.4
(3) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183341_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1097
Sequence Type Exemplar sequence
Representative Public ID T23G11.1 NCBI
Target Description T23G11.1 /REP_DB=WormBase Gene ID /WP=CE14092 /TR=Q9XVI1 /GB=CAB03413.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059744 NCBI Caenorhabditis elegans T23G11.1 (T23G11.1) mRNA, complete cds. 11/11 None
SNAP00000027655 ENSEMBL cdna:SNAP chromosome:CEL140:I:7709544:7710096:-1 11/11 None
GENEFINDER00000027656 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7709544:7710096:-1 11/11 None
T23G11.1 ENSEMBL cdna:known chromosome:CEL140:I:7709544:7710096:-1 gene:T23G11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7709474-7710027(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23G11.1
Entrez Gene 172534 Entrez gene
SwissProt Q9XVI1 EMBL-EBI
WormBase CE14092 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03413 Hypothetical protein T23G11.1 [Caenorhabditis elegans] ref|NP_492145.1| T23G11.1 [Caenorhabditis elegans] 2.0E-81
blast CAE57358 Hypothetical protein CBG00302 [Caenorhabditis briggsae] 2.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492145.1 1 71-93
T23G11.1 1 71-93
SNAP00000027655 1 71-93
GENEFINDER00000027656 1 71-93
Sequence
Target Sequence 
>C. ELEGANS:183341_AT
acagccgtactgcgcagtcagagaccaacactgccgtcatcccaccgatgagcgattccg
agctaaacactgctatcaattcgactctcagatctcgtggaaaagcgtctactcgtactg
cattgagcactgcaaccgctgttgaaaatggaccaagttatgaaaaaatgatttcggcgt
tcacttcagtcgctgtatcctacttcgtcttggctatttcgttttacattgaaacaactg
tcagcttgttccacctcgcttatttctcgtacagaaatccggcagtttcgaaggatctca
tcaaaactgcattccatcttttgaagacttcctacgacaacaaattgctgacatttgccg
aaatcatcgagactacacaaaacagtatgatcaagccaatggctcatcagaataaacaac
actttttggaggaaaaccagcgtaccgcacagttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCCGTACTGCGCAGTCAGAGAC 106 109 29 Antisense
TCATCCCACCGATGAGCGATTCCGA 286 621 65 Antisense
TAAACACTGCTATCAATTCGACTCT 228 641 92 Antisense
AATTCGACTCTCAGATCTCGTGGAA 266 177 106 Antisense
AAAAGCGTCTACTCGTACTGCATTG 624 131 129 Antisense
ACTGCATTGAGCACTGCAACCGCTG 251 95 145 Antisense
AAATGATTTCGGCGTTCACTTCAGT 34 121 194 Antisense
CCTACTTCGTCTTGGCTATTTCGTT 697 267 227 Antisense
AAACAACTGTCAGCTTGTTCCACCT 365 129 260 Antisense
CCGGCAGTTTCGAAGGATCTCATCA 348 265 307 Antisense
GAAAACCAGCGTACCGCACAGTTGC 159 355 460 Antisense
Sequence Source Affymetrix Proprietary Database