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[183338_at]

Description F23B12.2 /REP_DB=WormBase Gene ID /WP=CE09594 /TR=Q19754 /GB=CAB01169.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 26      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.1
(-3)
A 		6.1
(-0.3)
A 		4.7
(-2.2)
A 		8.5
(3)
A 		4
B 2.5
(-0.7)
A 		3.6
(3)
A 		1.8
(-3)
A 		2.2
(-1.7)
A 		2
C 1.3
(-3)
A 		5.2
(0)
A 		1.4
(-2.9)
A 		9.1
(3)
A 		8
avr 2.6
(-3) 		5
(0.6) 		2.6
(-3) 		6.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3.6
(1.7)
A 		2.5
(-3)
A 		2.9
(-1.3)
A 		2.6
(-2.6)
A 		3.3
(0.4)
A 		3.9
(3)
A 		1
B 2.4
(-0.2)
A 		3.4
(3)
A 		1.6
(-2.7)
A 		2.2
(-0.8)
A 		2.2
(-0.8)
A 		1.5
(-3)
A 		2
C 0.8
(-3)
A 		3.7
(2.6)
A 		1.7
(-1.3)
A 		3.9
(3)
A 		2.7
(0.7)
A 		2.5
(0.3)
A 		3
avr 2.3
(-1.9) 		3.2
(3) 		2.1
(-3) 		2.9
(1.4) 		2.7
(0.3) 		2.6
(-0.3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.5
(3)
A 		1.3
(-1)
A 		1.2
(-3)
A 		1.2
(-3)
A 		0
B 0.8
(1.8)
A 		0.9
(3)
A 		0.4
(-3)
A 		0.5
(-1.8)
A 		1
C 0.4
(-3)
A 		1.5
(3)
A 		0.5
(-2.5)
A 		1.5
(3)
A 		1
avr 0.9
(-0.6) 		1.2
(3) 		0.7
(-3) 		1.1
(1.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.7
(-1.5)
A 		0.9
(1.5)
A 		0.6
(-3)
A 		0.7
(-1.5)
A 		1
(3)
A 		0.9
(1.5)
A 		0
B 0.8
(0.4)
A 		1.1
(3)
A 		0.4
(-3)
A 		0.6
(-1.3)
A 		0.9
(1.3)
A 		0.5
(-2.1)
A 		1
C 0.3
(-3)
A 		1.1
(3)
A 		0.4
(-2.3)
A 		0.8
(0.8)
A 		0.9
(1.5)
A 		0.8
(0.8)
A 		1
avr 0.6
(-1.8) 		1
(3) 		0.5
(-3) 		0.7
(-0.6) 		0.9
(1.8) 		0.7
(-0.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183338_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14403
Sequence Type Exemplar sequence
Representative Public ID F23B12.2 NCBI
Target Description F23B12.2 /REP_DB=WormBase Gene ID /WP=CE09594 /TR=Q19754 /GB=CAB01169.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F23B12.2 ENSEMBL cdna:pseudogene chromosome:CEL140:V:14437151:14438331:-1 gene:F23B12.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025801 5/11 Cross Hyb Matching Probes None
SNAP00000025802 2/11 Cross Hyb Matching Probes None
GENEFINDER00000025811 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14437150-14438331(-) 100.0 100.0
Public Domain and Genome References
Ensembl F23B12.2
Sequence
Target Sequence 
>C. ELEGANS:183338_AT
acatcatggtgtgctactcaaaaacctgagcgatttttgagattggcggtttttctgaat
tatggaattggttacgcaaaagatatcatcggctattcacttgcatatttgactcccatc
tttatattattcggttttgccctggctattccaagatatttgaatgaagccacatgtgct
caacttgtttctccagttccatttggatcagtatctagtatgtcattaatagatcatgat
actgaacaaacagatttggctactgtaatcgaatttactgctcaaccaatcacgattatt
ataatcattttgctcaactgtatgatgtttcaaaaacttcgacataagaaagcattaagt
acgtctgcgaatcaaaaaatgaataatattgctgaaagagtgttgacagtaaccatggta
ttgatacttttacctttaatcgtaaatattacaatttctattctggaatttttcgattat
tttcattatttgttgtacttgctgagagatgtcagcattgattctcaatctctcgtaatt
acgtggtacttttatttaacacatccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCATGGTGTGCTACTCAAAAAC 66 105 301 Antisense
GAGATTGGCGGTTTTTCTGAATTAT 290 397 339 Antisense
AGATATCATCGGCTATTCACTTGCA 244 65 381 Antisense
TTCACTTGCATATTTGACTCCCATC 136 687 396 Antisense
GACTCCCATCTTTATATTATTCGGT 353 375 411 Antisense
TTATTCGGTTTTGCCCTGGCTATTC 402 677 427 Antisense
GAAGCCACATGTGCTCAACTTGTTT 367 345 466 Antisense
GAATTTACTGCTCAACCAATCACGA 513 325 571 Antisense
AAAGCATTAAGTACGTCTGCGAATC 3 125 649 Antisense
GATTCTCAATCTCTCGTAATTACGT 43 433 820 Antisense
GGTACTTTTATTTAACACATCCAGT 255 505 845 Antisense
Sequence Source Affymetrix Proprietary Database