[Home] | [Total List]

[183337_at]

Description C49H3.4 /REP_DB=WormBase Gene ID /WP=CE04230 /TR=Q9GYQ8 /GB=AAF99900.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 65      6grp_total > 55      4grp_total > 11      6grp_cgc > 56      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 50.5
(-3)
P 		74.7
(-1.9)
A 		51.2
(-3)
A 		185.7
(3)
P 		135
B 98.5
(-0.5)
M 		65.1
(-3)
A 		85.2
(-1.5)
A 		146.8
(3)
P 		82
C 109
(-1.1)
P 		94.6
(-1.6)
A 		51.3
(-3)
A 		231
(3)
P 		180
avr 86
(-1.9) 		78.1
(-2.3) 		62.6
(-3) 		187.8
(3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 87.1
(-0.9)
M 		114.1
(1.9)
M 		118.3
(2.4)
P 		101.9
(0.7)
P 		66.5
(-3)
P 		124.3
(3)
P 		58
B 105.2
(0.1)
P 		70.9
(-3)
P 		104.2
(0)
P 		84.7
(-1.7)
P 		87.3
(-1.5)
P 		137.1
(3)
P 		66
C 95.7
(-1.8)
A 		103.1
(-1.3)
P 		165.2
(3)
A 		79.1
(-3)
P 		149.1
(1.9)
A 		138
(1.1)
A 		86
avr 96
(-2) 		96
(-2) 		129.2
(2.5) 		88.6
(-3) 		101
(-1.3) 		133.1
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 18.4
(-0.8)
P 		16.2
(-1.8)
A 		13.4
(-3)
A 		27.2
(3)
P 		14
B 31.4
(3)
M 		16.1
(-3)
A 		19.7
(-1.6)
A 		31.3
(3)
P 		15
C 36.1
(2.2)
P 		27.2
(-0.4)
A 		17.9
(-3)
A 		39
(3)
P 		21
avr 28.6
(1.5) 		19.8
(-1.9) 		17
(-3) 		32.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 16.1
(-3)
M 		40.6
(3)
M 		25.8
(-0.6)
P 		25.8
(-0.6)
P 		20.1
(-2)
P 		30.3
(0.5)
P 		25
B 36.6
(-0)
P 		23.6
(-2.7)
P 		25.3
(-2.4)
P 		22.4
(-3)
P 		35.5
(-0.3)
P 		51.1
(3)
P 		29
C 35.5
(0.6)
A 		31.4
(-0.1)
P 		42
(1.8)
A 		15.9
(-3)
P 		48.2
(3)
A 		46.2
(2.6)
A 		32
avr 29.4
(-0.7) 		31.9
(-0) 		31
(-0.3) 		21.4
(-3) 		34.6
(0.8) 		42.5
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10134
Sequence Type Exemplar sequence
Representative Public ID C49H3.4 NCBI
Target Description C49H3.4 /REP_DB=WormBase Gene ID /WP=CE04230 /TR=Q9GYQ8 /GB=AAF99900.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068918
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000028679 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7915295:7916574:1 None
SNAP00000028669 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7915295:7916574:1 None
NM_068918 NCBI Caenorhabditis elegans C49H3.4 (C49H3.4) mRNA, complete cds. None
C49H3.4 ENSEMBL cdna:known chromosome:CEL140:IV:7915295:7916648:1 gene:C49H3.4 R 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7915300-7916580(+) 91.61 100.0
Public Domain and Genome References
Gene Title
Ensembl C49H3.4
Entrez Gene 183627 Entrez gene
SwissProt Q9GYQ8 EMBL-EBI
WormBase CE34766 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5732 small nucleolar ribonucleoprotein complex inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAO61428 Hypothetical protein C49H3.4 [Caenorhabditis elegans] ref|NP_501319.2| C49H3.4 [Caenorhabditis elegans] 1.0E-124
blast AAO61428 Hypothetical protein C49H3.4 [Caenorhabditis elegans] ref|NP_501319.2| C49H3.4 [Caenorhabditis elegans] 1.0E-116
blast CAE70908 Hypothetical protein CBG17705 [Caenorhabditis briggsae] 3.0E-68
blast CAE70908 Hypothetical protein CBG17705 [Caenorhabditis briggsae] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR001163 EMBL-EBI Small nuclear ribonucleoprotein (Sm protein) 3.9E-5
Pfam IPR001163 EMBL-EBI Small nuclear ribonucleoprotein (Sm protein) 3.9E-5
Sequence
Target Sequence 
>C. ELEGANS:183337_AT
tggtctcaccacgaacacatgaagttacagtagctcgatgcctgcgtggcgagacccgtg
agcgtaaaataagacgaaaattctcattttggacgtctattatcataattttggaagtcg
accaaaagtactttaaaaatgttcttaattttgcactatctatacaacaagctcgagatc
gtcaaatacgattggaagcaatgatgactgatggacgaagtgtaattgaaaaaaaaggaa
taacatttcacgataaaatgattacaattgaaggaccaatgtcgatgattgcaaatgcag
ttataaatcaaaagagaattgaagtaagagttcgttcggcaattcgaattgatcggattt
tcgagggaataccaaccacttttgatgaacatttcaatttaatgatgaaagatgttacgg
aaactgttctacatggaagaaaagcacaaaaagaattcacaaatcggaaagaaatgcaac
tactactgccagagtttcttcggtggaaagaaggtggaaattggcctatgaaagttggaa
caaatcgtcttatagaacatcgtttccagagagcatgcttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTCTCACCACGAACACATGAAGT 499 551 320 Antisense
AAGTTACAGTAGCTCGATGCCTGCG 255 155 341 Antisense
TGGCGAGACCCGTGAGCGTAAAATA 598 497 366 Antisense
ATTCTCATTTTGGACGTCTATTATC 700 9 399 Antisense
ATGTTCTTAATTTTGCACTATCTAT 550 47 458 Antisense
GCACTATCTATACAACAAGCTCGAG 90 315 472 Antisense
AAGTAAGAGTTCGTTCGGCAATTCG 533 157 641 Antisense
TTCGAGGGAATACCAACCACTTTTG 553 693 679 Antisense
TACTACTGCCAGAGTTTCTTCGGTG 69 647 800 Antisense
ATCGTCTTATAGAACATCGTTTCCA 296 35 863 Antisense
ATCGTTTCCAGAGAGCATGCTTCAT 45 35 878 Antisense
Sequence Source Affymetrix Proprietary Database