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[183336_at] 7TM chemoreceptor, srx family

Description F59B1.7 /REP_DB=WormBase Gene ID /WP=CE17948 /TR=O61881 /GB=AAC17660.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 27      6grp_cgc > 81      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 36.2
(0.1)
A 		7.5
(-2.6)
A 		2.7
(-3)
A 		67.9
(3)
A 		65
B 19.1
(-1.5)
A 		57.6
(3)
A 		6.7
(-3)
A 		36.8
(0.5)
A 		51
C 10.6
(-3)
A 		53.2
(1.2)
A 		20.2
(-2)
A 		71.1
(3)
A 		61
avr 22
(-1.5) 		39.4
(0.6) 		9.9
(-3) 		58.6
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 20.8
(-0.3)
A 		36.1
(3)
A 		22.7
(0.1)
A 		8
(-3)
A 		9.1
(-2.8)
A 		14.6
(-1.6)
A 		28
B 23.2
(-1.1)
A 		16.4
(-1.7)
A 		65.8
(3)
A 		15.2
(-1.8)
A 		5.5
(-2.8)
A 		2.9
(-3)
A 		63
C 11.5
(0.8)
A 		5.4
(-1.4)
A 		16.8
(2.7)
A 		17.7
(3)
A 		1.1
(-3)
A 		5.2
(-1.5)
A 		17
avr 18.5
(-0.3) 		19.3
(-0.2) 		35.1
(3) 		13.6
(-1.3) 		5.2
(-3) 		7.6
(-2.5) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 13.2
(3)
A 		1.6
(-2.6)
A 		0.7
(-3)
A 		9.9
(1.4)
A 		13
B 6.1
(-0.8)
A 		14.2
(3)
A 		1.5
(-3)
A 		7.8
(-0)
A 		13
C 3.5
(-3)
A 		15.3
(3)
A 		7
(-1.2)
A 		12
(1.3)
A 		12
avr 7.6
(0.7) 		10.4
(3) 		3.1
(-3) 		9.9
(2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.8
(-2)
A 		12.8
(3)
A 		5
(-1.3)
A 		2
(-3)
A 		2.7
(-2.6)
A 		3.5
(-2.2)
A 		11
B 8.1
(-0.2)
A 		5.4
(-1.3)
A 		16
(3)
A 		4
(-1.8)
A 		2.2
(-2.6)
A 		1.1
(-3)
A 		15
C 4.3
(3)
A 		1.6
(-1.2)
A 		4.3
(3)
A 		3.6
(1.9)
A 		0.4
(-3)
A 		1.7
(-1)
A 		4
avr 5.4
(0.3) 		6.6
(1.4) 		8.4
(3) 		3.2
(-1.7) 		1.8
(-3) 		2.1
(-2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15481
Sequence Type Exemplar sequence
Representative Public ID F59B1.7 NCBI
Target Description F59B1.7 /REP_DB=WormBase Gene ID /WP=CE17948 /TR=O61881 /GB=AAC17660.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071620 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-41) (srx-41) mRNA, complete cds. 11/11 None
GENEFINDER00000030027 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3634503:3636988:-1 11/11 None
F59B1.7 ENSEMBL cdna:known chromosome:CEL140:V:3634503:3636988:-1 gene:F59B1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3634502-3636988(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-41
Ensembl F59B1.7
Entrez Gene 186592 Entrez gene
SwissProt O61881 EMBL-EBI
WormBase CE17948 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17660 Serpentine receptor, class x protein 41 [Caenorhabditis elegans] ref|NP_504021.1| Serpentine Receptor, class X family member (srx-41) [Caenorhabditis elegans] 0.0
blast CAE62547 Hypothetical protein CBG06656 [Caenorhabditis briggsae] 1.0E-153
blast CAE58279 Hypothetical protein CBG01386 [Caenorhabditis briggsae] 5.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504021.1 7 24-46,66-85,95-117,137-159,194-216,237-259,269-291
F59B1.7 7 24-46,66-85,95-117,137-159,194-216,237-259,269-291
GENEFINDER00000030027 7 24-46,66-85,95-117,137-159,194-216,237-259,269-291
Sequence
Target Sequence 
>C. ELEGANS:183336_AT
acgcggattctaattgctctagcctacgcgatcccgtgcttcacctcaatttacatgcat
cttgctaataactgcaaccttccctacgtggatttcggttggtactttggggtgaacaca
tctgccgattgtgacgtcatccggttctacgtggatttttgcaaggattttggagtagtc
gcgctgatcgctattgtggacgtggggactattgtgatgatcaaggttaccgcgccagga
atgaagcttttgtcagccaactgtgcccagagccagaaaaagcgacagcgggagatcaca
ttcgtcaagcaggctctgattcagggagcagtttttgcgacggagctcgtcttctttttc
ataatctccggaatgcaatcacagccggtggctattttcctgtgcacgacggtagcgtgg
agtttggtgcatactattgatccgttggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCGGATTCTAATTGCTCTAGCCT 406 91 424 Antisense
GCTTCACCTCAATTTACATGCATCT 658 305 461 Antisense
TGCTAATAACTGCAACCTTCCCTAC 123 579 486 Antisense
GCCGATTGTGACGTCATCCGGTTCT 601 283 547 Antisense
GAGTAGTCGCGCTGATCGCTATTGT 39 399 596 Antisense
GAAGCTTTTGTCAGCCAACTGTGCC 17 343 666 Antisense
GGGAGATCACATTCGTCAAGCAGGC 452 495 713 Antisense
AGCAGTTTTTGCGACGGAGCTCGTC 645 77 750 Antisense
GAATGCAATCACAGCCGGTGGCTAT 129 331 794 Antisense
TATTTTCCTGTGCACGACGGTAGCG 269 661 816 Antisense
GGTGCATACTATTGATCCGTTGGTC 265 501 849 Antisense
Sequence Source Affymetrix Proprietary Database