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[183334_at]

Description C16B8.2 /REP_DB=WormBase Gene ID /WP=CE04012 /TR=Q18042 /GB=AAA82619.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 41.4
(-3)
A 		64.2
(-0.7)
P 		42.8
(-2.9)
A 		100
(3)
P 		59
B 101
(3)
M 		61
(-3)
P 		82
(0.2)
P 		76.8
(-0.6)
P 		40
C 58.4
(3)
M 		55.4
(1.2)
P 		50.1
(-2)
M 		48.4
(-3)
A 		10
avr 66.9
(0.1) 		60.2
(-2.3) 		58.3
(-3) 		75.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 71.6
(3)
A 		51.4
(1)
P 		12.4
(-2.8)
A 		27.2
(-1.3)
P 		25.5
(-1.5)
A 		10.2
(-3)
A 		61
B 34.3
(-2.1)
M 		26.9
(-3)
A 		36.9
(-1.8)
A 		76.9
(3)
A 		49.9
(-0.2)
A 		53.4
(0.2)
P 		50
C 78.3
(3)
P 		70.8
(2)
A 		45.7
(-1.3)
A 		32.9
(-3)
A 		58.1
(0.3)
A 		33.9
(-2.9)
A 		45
avr 61.4
(3) 		49.7
(0.6) 		31.7
(-3) 		45.7
(-0.2) 		44.5
(-0.4) 		32.5
(-2.8) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 15.1
(3)
A 		13.9
(1.2)
P 		11.2
(-3)
A 		14.6
(2.2)
P 		4
B 32.2
(3)
M 		15.1
(-3)
P 		19
(-1.6)
P 		16.4
(-2.5)
P 		17
C 19.3
(3)
M 		15.9
(1.2)
P 		17.5
(2)
M 		8.2
(-3)
A 		11
avr 22.2
(3) 		15
(-1.7) 		15.9
(-1.2) 		13.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 13.2
(1.1)
A 		18.3
(3)
P 		2.7
(-2.9)
A 		6.9
(-1.3)
P 		7.7
(-1)
A 		2.5
(-3)
A 		16
B 11.9
(-1.4)
M 		9
(-2.9)
A 		8.9
(-3)
A 		20.4
(3)
A 		20.3
(2.9)
A 		19.9
(2.7)
P 		12
C 29
(3)
P 		21.6
(1)
A 		11.6
(-1.7)
A 		6.6
(-3)
A 		18.8
(0.3)
A 		11.4
(-1.7)
A 		22
avr 18
(3) 		16.3
(2) 		7.7
(-3) 		11.3
(-0.9) 		15.6
(1.6) 		11.3
(-0.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183334_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18445
Sequence Type Exemplar sequence
Representative Public ID C16B8.2 NCBI
Target Description C16B8.2 /REP_DB=WormBase Gene ID /WP=CE04012 /TR=Q18042 /GB=AAA82619.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076284 NCBI Caenorhabditis elegans C16B8.2 (C16B8.2) mRNA, complete cds. 11/11 None
SNAP00000002084 ENSEMBL cdna:SNAP chromosome:CEL140:X:3961908:3963872:-1 11/11 None
GENEFINDER00000002091 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3962160:3966372:-1 9/11 None
C16B8.2 ENSEMBL cdna:known chromosome:CEL140:X:3961871:3965812:-1 gene:C16B8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3962160-3965813(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16B8.2
Entrez Gene 180680 Entrez gene
SwissProt Q18042 EMBL-EBI
WormBase CE30247 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82619 Hypothetical protein C16B8.2 [Caenorhabditis elegans] ref|NP_508685.2| C16B8.2 [Caenorhabditis elegans] 0.0
blast CAE68506 Hypothetical protein CBG14317 [Caenorhabditis briggsae] 0.0
blast CAE68506 Hypothetical protein CBG14317 [Caenorhabditis briggsae] 1.0E-139
Sequence
Target Sequence 
>C. ELEGANS:183334_AT
aacggtttcaagaagccacgcgctttgagtgccgaaccaacacgagaggaattgaaagac
cacaagagtttagttgatttattcaattcacacgcggctaaagtttcggaaaaggatgat
ggtgatgatgtcaagccaagtttcgagattttgcaaacttttttgaatacaagcccggag
ccggataccgatatactggtgtctctggcaacagaagacccttggtcaaccacgaaattc
tccccagtcccggagttaccaattgaagataaaatattaactgaacggaaaccatggatg
atccaccaaggaaaactatccaacattgctcccttatcaaacatcagtggtgatatggca
tctgacgacccaccagaggtgacaccagagccggcaccttttcaacagcaccagatggga
gtttggtatccgatgaaaaaaggagacattccgcacctgggaatatttagtggggagttc
agaagggctccgttgaaaaaaatcagaaccgccagtgacatcaggctcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGTTTCAAGAAGCCACGCGCTT 71 145 1435 Antisense
GCGCTTTGAGTGCCGAACCAACACG 182 289 1454 Antisense
GCCCGGAGCCGGATACCGATATACT 547 277 1607 Antisense
CCGATATACTGGTGTCTCTGGCAAC 36 265 1622 Antisense
CCAGTCCCGGAGTTACCAATTGAAG 603 271 1678 Antisense
GGAAAACTATCCAACATTGCTCCCT 612 527 1744 Antisense
TGCTCCCTTATCAAACATCAGTGGT 294 581 1761 Antisense
GGTGATATGGCATCTGACGACCCAC 665 499 1783 Antisense
CACCTTTTCAACAGCACCAGATGGG 566 201 1829 Antisense
AAAAAGGAGACATTCCGCACCTGGG 676 129 1871 Antisense
GAACCGCCAGTGACATCAGGCTCTA 79 347 1940 Antisense
Sequence Source Affymetrix Proprietary Database