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[183332_at]

Description K09E2.3 /REP_DB=WormBase Gene ID /WP=CE02816 /TR=Q21392 /GB=AAC46574.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 42      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 52      6grp_total > 30      4grp_total > 59      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1039
1 2 3 4 range
A 762.6
(-0.1)
P 		871.2
(0.6)
P 		1271.5
(3)
P 		272.4
(-3)
P 		999
B 682.3
(0.1)
P 		1062.3
(3)
P 		1052.6
(2.9)
P 		279.5
(-3)
P 		783
C 791.2
(0.7)
P 		1089
(2.7)
P 		1128.1
(3)
P 		232.8
(-3)
P 		895
avr 745.4
(0.3) 		1007.5
(2) 		1150.7
(3) 		261.6
(-3) 		889

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 400.9
(-2.1)
P 		695.6
(3)
P 		547.6
(0.4)
P 		679.4
(2.7)
P 		488.1
(-0.6)
P 		347.5
(-3)
P 		348
B 525.2
(-0.2)
P 		723.6
(3)
P 		718.6
(2.9)
P 		611.8
(1.2)
P 		575.2
(0.6)
P 		351
(-3)
P 		373
C 625.6
(0.5)
P 		783.6
(3)
P 		738.7
(2.3)
P 		649.1
(0.9)
P 		507.6
(-1.4)
P 		404.6
(-3)
P 		379
avr 517.2
(-0.6) 		734.3
(3) 		668.3
(1.9) 		646.8
(1.6) 		523.6
(-0.4) 		367.7
(-3) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 277.7
(1.9)
P 		189.1
(0.1)
P 		332.4
(3)
P 		39.9
(-3)
P 		293
B 217.6
(1.7)
P 		262.4
(3)
P 		243.9
(2.5)
P 		59.6
(-3)
P 		203
C 261.9
(0.8)
P 		313.1
(1.6)
P 		393.2
(3)
P 		39.2
(-3)
P 		354
avr 252.4
(1.5) 		254.9
(1.5) 		323.2
(3) 		46.2
(-3) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 73.9
(-3)
P 		247.4
(3)
P 		119.2
(-1.4)
P 		172.3
(0.4)
P 		147.3
(-0.5)
P 		84.6
(-2.6)
P 		174
B 182.7
(-0.2)
P 		240.9
(3)
P 		174.5
(-0.6)
P 		162
(-1.3)
P 		233.7
(2.6)
P 		130.9
(-3)
P 		110
C 231.9
(2.6)
P 		239.1
(3)
P 		188
(0.2)
P 		130.5
(-3)
P 		164.2
(-1.1)
P 		135.4
(-2.7)
P 		109
avr 162.8
(-0.8) 		242.5
(3) 		160.6
(-0.9) 		154.9
(-1.2) 		181.7
(0.1) 		117
(-3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183332_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16748
Sequence Type Exemplar sequence
Representative Public ID K09E2.3 NCBI
Target Description K09E2.3 /REP_DB=WormBase Gene ID /WP=CE02816 /TR=Q21392 /GB=AAC46574.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077066 NCBI Caenorhabditis elegans K09E2.3 (K09E2.3) mRNA, complete cds. 11/11 None
SNAP00000011509 ENSEMBL cdna:SNAP chromosome:CEL140:X:8676612:8677540:1 11/11 None
GENEFINDER00000011514 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8676612:8677540:1 11/11 None
K09E2.3 ENSEMBL cdna:known chromosome:CEL140:X:8676565:8677540:1 gene:K09E2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8676610-8677539(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09E2.3
Entrez Gene 187217 Entrez gene
SwissProt Q21392 EMBL-EBI
WormBase CE02816 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46574 Hypothetical protein K09E2.3 [Caenorhabditis elegans] ref|NP_509467.1| K09E2.3 [Caenorhabditis elegans] 1.0E-116
blast CAE69344 Hypothetical protein CBG15422 [Caenorhabditis briggsae] 1.0E-97
Sequence
Target Sequence 
>C. ELEGANS:183332_AT
cacgttccttcagatttcacacaagaacctgtacaattcgttgctctcgaggacaccgga
gccattctcacacatagtcgaaaagggctcgttgcaattggtgaaaagaaaaccgagatt
tcagtggttgacttcgtcggctccgcagatgttggagttctggagaacaccttcactatg
cagtggcaaaatattggaaacactactcaagtacacttcacgggaaccggtggatcattg
tccggagagggtaatcctggtgttcttcttatcgacggcgaggttatcaaagttaatctt
cttcaaaagagaacagatggatctttctatttggaggccaacgaggacttcctgatgatt
gttgccaaatcgaaagctgacggatctcctgatgctgagactcttcaagcttcacaattc
ccagcaagcggagccaagcttccaatcggctactggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGTTCCTTCAGATTTCACACAAG 687 197 34 Antisense
GAACCTGTACAATTCGTTGCTCTCG 54 347 58 Antisense
TGCTCTCGAGGACACCGGAGCCATT 286 579 75 Antisense
CGGAGCCATTCTCACACATAGTCGA 176 243 90 Antisense
GATTTCAGTGGTTGACTTCGTCGGC 310 429 150 Antisense
GTTCTGGAGAACACCTTCACTATGC 312 443 190 Antisense
AGAGGGTAATCCTGGTGTTCTTCTT 104 55 279 Antisense
GAGGACTTCCTGATGATTGTTGCCA 332 405 376 Antisense
AAAGCTGACGGATCTCCTGATGCTG 658 123 406 Antisense
ATGCTGAGACTCTTCAAGCTTCACA 402 41 425 Antisense
GCCAAGCTTCCAATCGGCTACTGGC 39 279 466 Antisense
Sequence Source Affymetrix Proprietary Database