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[183331_s_at]

Description Y39B6B.T /REP_DB=WormBase Gene ID /WP=CE21695 /TR=Q9NEU0 /GB=CAB60925.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 85      4grp_high_8_8 > 14      6grp_highest_nonorm > 91      6grp_total > 0      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 122.5
(-3)
P 		132.7
(-2.4)
P 		144
(-1.8)
P 		233.6
(3)
P 		111
B 126.4
(-2.5)
P 		114
(-3)
M 		145.4
(-1.8)
P 		276.2
(3)
P 		162
C 128.8
(-3)
P 		148.1
(-1.9)
P 		143.7
(-2.1)
P 		232.2
(3)
P 		103
avr 125.9
(-3) 		131.6
(-2.7) 		144.4
(-2.1) 		247.3
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 103.8
(-3)
P 		178.4
(1.9)
P 		183.9
(2.3)
P 		155.8
(0.4)
P 		147.8
(-0.1)
P 		194.4
(3)
P 		91
B 183.1
(-3)
P 		203.9
(0.6)
P 		217.7
(3)
P 		206.2
(1)
P 		198.6
(-0.3)
P 		216.1
(2.7)
P 		35
C 196.3
(-0.2)
P 		225.7
(3)
P 		193.5
(-0.5)
P 		170.3
(-3)
P 		224.1
(2.8)
P 		210.1
(1.3)
P 		55
avr 161.1
(-3) 		202.7
(2.4) 		198.4
(1.9) 		177.4
(-0.9) 		190.2
(0.8) 		206.9
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 44.6
(3)
P 		28.8
(-3)
P 		37.6
(0.3)
P 		34.2
(-0.9)
P 		16
B 40.3
(-0.6)
P 		28.2
(-3)
M 		33.7
(-1.9)
P 		58.9
(3)
P 		31
C 42.6
(-1.1)
P 		42.6
(-1.1)
P 		50.1
(3)
P 		39.2
(-3)
P 		11
avr 42.5
(2.1) 		33.2
(-3) 		40.5
(1) 		44.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 19.1
(-3)
P 		63.4
(3)
P 		40
(-0.2)
P 		39.5
(-0.2)
P 		44.6
(0.5)
P 		47.3
(0.8)
P 		44
B 63.7
(-0.7)
P 		67.9
(0.2)
P 		52.9
(-3)
P 		54.6
(-2.6)
P 		80.7
(3)
P 		80.6
(3)
P 		28
C 72.8
(3)
P 		68.9
(2.4)
P 		49.2
(-0.7)
P 		34.2
(-3)
P 		72.5
(3)
P 		70.3
(2.6)
P 		39
avr 51.9
(-0.7) 		66.7
(3) 		47.4
(-1.8) 		42.8
(-3) 		65.9
(2.8) 		66.1
(2.8) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183331_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19460
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.T NCBI
Target Description Y39B6B.T /REP_DB=WormBase Gene ID /WP=CE21695 /TR=Q9NEU0 /GB=CAB60925.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029056(11), NM_001029057(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029056 NCBI Caenorhabditis elegans Y39B6A.12a (Y39B6A.12) mRNA, complete cds. 11/11 None
NM_001029057 NCBI Caenorhabditis elegans Y39B6A.12b (Y39B6A.12) mRNA, complete cds. 11/11 None
GENEFINDER00000030718 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19122196:19124784:-1 11/11 None
Y39B6A.12 ENSEMBL cdna:known chromosome:CEL140:V:19122163:19127481:-1 gene:Y39B6A.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030552 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19122195-19124784(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39B6A.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79178 Hypothetical protein Y39B6A.12b [Caenorhabditis elegans] ref|NP_001024228.1| Y39B6A.12b [Caenorhabditis elegans] 1.0E-174
blast CAD31811 Hypothetical protein Y39B6A.12a [Caenorhabditis elegans] ref|NP_001024227.1| Y39B6A.12a [Caenorhabditis elegans] 1.0E-173
blast CAI79178 Hypothetical protein Y39B6A.12b [Caenorhabditis elegans] ref|NP_001024228.1| Y39B6A.12b [Caenorhabditis elegans] 1.0E-171
blast CAD31811 Hypothetical protein Y39B6A.12a [Caenorhabditis elegans] ref|NP_001024227.1| Y39B6A.12a [Caenorhabditis elegans] 1.0E-171
blast CAD31811 Hypothetical protein Y39B6A.12a [Caenorhabditis elegans] ref|NP_001024227.1| Y39B6A.12a [Caenorhabditis elegans] 3.0E-90
blast CAI79178 Hypothetical protein Y39B6A.12b [Caenorhabditis elegans] ref|NP_001024228.1| Y39B6A.12b [Caenorhabditis elegans] 9.0E-89
blast CAE73136 Hypothetical protein CBG20523 [Caenorhabditis briggsae] 4.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR003656 EMBL-EBI BED finger 5.0E-18
Sequence
Target Sequence 
>C. ELEGANS:183331_S_AT
cgggctcttggagccagaacccgaccaggcgctcaaaaaactactcggaattgatgatgg
gcggtgtgaagaggttatagcgatcgccgcgccaattcagcaggatgaggagaaacaagt
gagctcaagctctggcggagcacaaaccaagaagcgaagagccgatgagcagaaattgac
tgaaaatccagcattaaacagtggaaaattctccctatcgattctctctgcaattcgtcg
gccacctcttccatcgagcactgccacgtcatcatcagccgcggcgccccagatcccggc
gatgacgtcatcagctgttgcctctgccacgtcagcagcagcagcagcgacgccaatgat
gccggcaaaatataatgcacaggcggtgcaaattttggattttgaggcaaaagtattgta
taatcaatcactgcattcgacaattgccagagaagacgccatgacaacatattatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGGCTCTTGGAGCCAGAACCCGAC 223 245 180 Antisense
CGACCAGGCGCTCAAAAAACTACTC 708 137 201 Antisense
GATGATGGGCGGTGTGAAGAGGTTA 324 411 232 Antisense
GAAGAGGTTATAGCGATCGCCGCGC 68 339 247 Antisense
CCGCGCCAATTCAGCAGGATGAGGA 333 263 266 Antisense
AAGTGAGCTCAAGCTCTGGCGGAGC 347 159 296 Antisense
GGCGGAGCACAAACCAAGAAGCGAA 248 541 313 Antisense
CCTATCGATTCTCTCTGCAATTCGT 475 269 393 Antisense
CAGCAGCGACGCCAATGATGCCGGC 68 201 521 Antisense
AATCACTGCATTCGACAATTGCCAG 183 171 605 Antisense
GAAGACGCCATGACAACATATTATC 626 339 631 Antisense
Sequence Source Affymetrix Proprietary Database