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[183330_s_at]

Description C09B8.4 /REP_DB=WormBase Gene ID /WP=CE02464 /TR=Q17846 /GB=AAA68802.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 47      4grp_high_8_8 > 29      6grp_highest_nonorm > 90      6grp_total > 47      4grp_total > 34      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 36.6
(-3)
A 		84.2
(0.2)
P 		59.1
(-1.5)
A 		124.8
(3)
P 		88
B 67
(-3)
P 		166
(3)
P 		89.3
(-1.6)
P 		85.5
(-1.9)
P 		99
C 44.3
(-3)
M 		131.3
(0.8)
P 		79.4
(-1.5)
P 		182.5
(3)
P 		138
avr 49.3
(-3) 		127.2
(2.7) 		75.9
(-1) 		130.9
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 204.7
(3)
P 		107.5
(-2.5)
P 		112.3
(-2.2)
P 		98
(-3)
P 		102.8
(-2.7)
P 		192.2
(2.3)
P 		107
B 153.6
(0.2)
P 		208.6
(2.6)
P 		97.4
(-2.4)
P 		83.9
(-3)
P 		101.8
(-2.2)
P 		216.5
(3)
P 		133
C 195.6
(1.3)
P 		242.3
(3)
P 		119
(-1.5)
P 		157.1
(-0.1)
P 		78.5
(-3)
P 		218.1
(2.1)
P 		164
avr 184.6
(1.7) 		186.1
(1.8) 		109.6
(-2.2) 		113
(-2) 		94.4
(-3) 		208.9
(3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 13.3
(-3)
A 		18.3
(3)
P 		15.4
(-0.5)
A 		18.3
(3)
P 		5
B 21.4
(-2.2)
P 		41
(3)
P 		20.7
(-2.3)
P 		18.2
(-3)
P 		23
C 14.6
(-3)
M 		37.7
(3)
P 		27.7
(0.4)
P 		30.8
(1.2)
P 		23
avr 16.4
(-3) 		32.3
(3) 		21.3
(-1.2) 		22.4
(-0.7) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 37.7
(0.6)
P 		38.2
(0.7)
P 		24.5
(-3)
P 		24.8
(-2.9)
P 		31
(-1.3)
P 		46.8
(3)
P 		22
B 53.5
(0.2)
P 		69.5
(1.9)
P 		23.6
(-2.9)
P 		22.2
(-3)
P 		41.4
(-1)
P 		80.7
(3)
P 		59
C 72.5
(2.8)
P 		73.9
(3)
P 		30.3
(-2.4)
P 		31.6
(-2.2)
P 		25.4
(-3)
P 		73
(2.9)
P 		49
avr 54.6
(1.2) 		60.5
(2.1) 		26.1
(-3) 		26.2
(-3) 		32.6
(-2) 		66.8
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183330_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16751
Sequence Type Exemplar sequence
Representative Public ID C09B8.4 NCBI
Target Description C09B8.4 /REP_DB=WormBase Gene ID /WP=CE02464 /TR=Q17846 /GB=AAA68802.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076605(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076605 NCBI Caenorhabditis elegans C09B8.4 (C09B8.4) mRNA, complete cds. 10/11 None
GENEFINDER00000035917 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6018249:6019891:-1 10/11 None
SNAP00000035902 ENSEMBL cdna:SNAP chromosome:CEL140:X:6018439:6019891:-1 10/11 None
C09B8.4 ENSEMBL cdna:known chromosome:CEL140:X:6018439:6019894:-1 gene:C09B8.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6018074-6019891(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09B8.4
Entrez Gene 180870 Entrez gene
SwissProt Q17846 EMBL-EBI
WormBase CE30242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68802 Hypothetical protein C09B8.4 [Caenorhabditis elegans] ref|NP_509006.2| C09B8.4 [Caenorhabditis elegans] 1.0E-161
blast AAA68802 Hypothetical protein C09B8.4 [Caenorhabditis elegans] ref|NP_509006.2| C09B8.4 [Caenorhabditis elegans] 1.0E-159
blast AAA68802 Hypothetical protein C09B8.4 [Caenorhabditis elegans] ref|NP_509006.2| C09B8.4 [Caenorhabditis elegans] 1.0E-156
blast CAE67226 Hypothetical protein CBG12665 [Caenorhabditis briggsae] 4.0E-88
blast CAE67226 Hypothetical protein CBG12665 [Caenorhabditis briggsae] 8.0E-87
blast CAE67226 Hypothetical protein CBG12665 [Caenorhabditis briggsae] 9.0E-87
blast NP_491980 T10B11.6 [Caenorhabditis elegans] gb|AAC67468.1| Hypothetical protein T10B11.6 [Caenorhabditis elegans] 7.0E-52
blast NP_491980 T10B11.6 [Caenorhabditis elegans] gb|AAC67468.1| Hypothetical protein T10B11.6 [Caenorhabditis elegans] 9.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR008547 EMBL-EBI Eukaryotic protein of unknown function DUF829 6.7E-106
Pfam IPR008547 EMBL-EBI Eukaryotic protein of unknown function DUF829 1.3E-104
Pfam IPR008547 EMBL-EBI Eukaryotic protein of unknown function DUF829 1.7E-101
Sequence
Target Sequence 
>C. ELEGANS:183330_S_AT
gaatcgtctcactggcaaaggcaacgggaaatccaaaactttttgataatgttcaaggaa
tcatttttgatagcgctccatccattccatttccacatcaaaacggaaaagctatgatgc
tttcaacgccttctgtaacttatatgaaagacgaaactcgacagaaaatctatgaactag
tcaatgcagttcgagataaattgctaagtccattggtaacgcttttaccatttcttcgac
catacttcttttcctattggtacattcatgacaaaattgagcttccaaaacgacaagtgt
atttttactctcacggggattcaatggtaccatacgatctactggaaaaatttgtagaaa
ttcaaagaaaaaggggatgccacgtagaaaatcttaacttcggagatacagagcacgtgg
cacatttccgtgcaaaaccggcagtgtattcagacaaatgcgttgaatttataatatgtc
atgtaacaggtacatctggagctggtactggagataccatcttcgatacagacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGTCTCACTGGCAAAGGCAAC 283 327 398 Antisense
CATTTTTGATAGCGCTCCATCCATT 200 215 459 Antisense
TCCATTCCATTTCCACATCAAAACG 484 591 478 Antisense
CTTTCAACGCCTTCTGTAACTTATA 193 221 517 Antisense
GCTAAGTCCATTGGTAACGCTTTTA 82 253 600 Antisense
TTTTACCATTTCTTCGACCATACTT 493 675 620 Antisense
CCATACTTCTTTTCCTATTGGTACA 26 271 637 Antisense
GTATTTTTACTCTCACGGGGATTCA 236 453 696 Antisense
TACAGAGCACGTGGCACATTTCCGT 235 643 804 Antisense
GCAAAACCGGCAGTGTATTCAGACA 27 319 829 Antisense
GGAGATACCATCTTCGATACAGACG 25 519 907 Antisense
Sequence Source Affymetrix Proprietary Database