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[183329_at]

Description F42G8.5 /REP_DB=WormBase Gene ID /WP=CE17064 /TR=O44513 /GB=AAB92066.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 02      4grp_highest_8_8 > 56      4grp_high_8_8 > 26      6grp_highest_nonorm > 50      6grp_total > 24      4grp_total > 37      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 362
1 2 3 4 range
A 779
(3)
P 		711.5
(1.9)
P 		417.5
(-3)
P 		653.7
(0.9)
P 		362
B 660.4
(3)
P 		619.2
(1.7)
P 		465.7
(-3)
P 		528.7
(-1.1)
P 		195
C 760
(3)
P 		599.7
(-1.1)
P 		548.4
(-2.4)
P 		525.3
(-3)
P 		235
avr 733.1
(3) 		643.5
(0.9) 		477.2
(-3) 		569.2
(-0.8) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 785.2
(3)
P 		603.6
(0.6)
P 		440.3
(-1.5)
P 		497.4
(-0.8)
P 		340
(-2.9)
P 		329.1
(-3)
P 		456
B 642.4
(3)
P 		493.9
(0.1)
P 		558
(1.3)
P 		336.6
(-3)
P 		343.1
(-2.9)
P 		357.6
(-2.6)
P 		306
C 692.9
(3)
P 		588.6
(1.4)
P 		522
(0.3)
P 		514.4
(0.2)
P 		307.1
(-3)
P 		329.6
(-2.7)
P 		386
avr 706.8
(3) 		562
(0.7) 		506.8
(-0.2) 		449.5
(-1.1) 		330.1
(-3) 		338.8
(-2.9) 		377
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 283.6
(3)
P 		154.4
(-1.1)
P 		109.1
(-2.6)
P 		95.7
(-3)
P 		188
B 210.6
(3)
P 		152.9
(-0.4)
P 		107.9
(-3)
P 		112.7
(-2.7)
P 		103
C 251.6
(3)
P 		172.4
(0.1)
P 		191.1
(0.8)
P 		88.6
(-3)
P 		163
avr 248.6
(3) 		159.9
(-0.6) 		136
(-1.5) 		99
(-3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 144.7
(-0.1)
P 		214.7
(3)
P 		95.9
(-2.3)
P 		126.1
(-0.9)
P 		102.6
(-2)
P 		80.1
(-3)
P 		135
B 223.5
(3)
P 		164.4
(0.4)
P 		135.5
(-0.9)
P 		89.1
(-3)
P 		139.4
(-0.8)
P 		133.3
(-1)
P 		134
C 256.8
(3)
P 		179.6
(0.1)
P 		132.9
(-1.7)
P 		103.5
(-2.8)
P 		99.4
(-3)
P 		110.3
(-2.6)
P 		157
avr 208.3
(3) 		186.2
(1.7) 		121.4
(-2.1) 		106.2
(-3) 		113.8
(-2.6) 		107.9
(-2.9) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183329_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10041
Sequence Type Exemplar sequence
Representative Public ID F42G8.5 NCBI
Target Description F42G8.5 /REP_DB=WormBase Gene ID /WP=CE17064 /TR=O44513 /GB=AAB92066.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068961(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068961 NCBI Caenorhabditis elegans F42G8.5 (F42G8.5) mRNA, complete cds. 11/11 None
SNAP00000028279 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8136814:8138905:1 11/11 None
GENEFINDER00000028291 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8136814:8139832:1 10/11 None
F42G8.5 ENSEMBL cdna:known chromosome:CEL140:IV:8137380:8139063:1 gene:F42G8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8137385-8138911(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42G8.5
Entrez Gene 185675 Entrez gene
SwissProt O44513 EMBL-EBI
WormBase CE17064 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92066 Hypothetical protein F42G8.5 [Caenorhabditis elegans] ref|NP_501362.1| F42G8.5 [Caenorhabditis elegans] 1.0E-142
blast AAB92066 Hypothetical protein F42G8.5 [Caenorhabditis elegans] ref|NP_501362.1| F42G8.5 [Caenorhabditis elegans] 1.0E-140
blast CAE58421 Hypothetical protein CBG01552 [Caenorhabditis briggsae] 1.0E-138
blast CAE58421 Hypothetical protein CBG01552 [Caenorhabditis briggsae] 1.0E-135
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501362.1 2 63-85,110-132
F42G8.5 2 63-85,110-132
SNAP00000028279 2 115-137,162-184
GENEFINDER00000028291 2 115-137,162-184
Sequence
Target Sequence 
>C. ELEGANS:183329_AT
atacgaccaccaccaattcaaattgcgggtcctattttatttggactcggatgttcgttt
ttgataatttcattaatctactttttatgcacaacaaagctctgtgatctctcgttacac
cacacaaagaagcacaatgatcctgctaggcttacgactattacaacacattatgtgccg
ctacctccgatctttgagaaagatccatatcaacctctacctccacctgcgtacccagtt
cttgagaatcgacacgcaatgtctaatgtagttaagccacacgatgaaaagaaactgtat
ccaccagtaattcctggatgttccacactttcccttcatagacgatctccgaataacatt
tttgtagcaagtccatataataccctaagagctacaagcgttggaagatatcaatctgga
ttccttgacacgaattcaataatggaaaatcggttaggatcaaggcagccgtcagttgca
agtagaagacaatcaagtgaagcttcaagtcaaaaaagatccaaatcaatgggaccttta
catcgaactaactcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACGACCACCACCAATTCAAATTG 416 23 319 Antisense
GGACTCGGATGTTCGTTTTTGATAA 269 525 361 Antisense
TGTGATCTCTCGTTACACCACACAA 147 557 421 Antisense
GATCCTGCTAGGCTTACGACTATTA 370 415 457 Antisense
CCGCTACCTCCGATCTTTGAGAAAG 32 263 496 Antisense
GAAAGATCCATATCAACCTCTACCT 330 359 516 Antisense
ACCTGCGTACCCAGTTCTTGAGAAT 54 89 543 Antisense
AATTCCTGGATGTTCCACACTTTCC 663 177 627 Antisense
TCCCTTCATAGACGATCTCCGAATA 433 597 649 Antisense
GGATCAAGGCAGCCGTCAGTTGCAA 446 511 775 Antisense
GGACCTTTACATCGAACTAACTCCA 152 523 850 Antisense
Sequence Source Affymetrix Proprietary Database