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[183328_at]

Description Y38F1A.1 /REP_DB=WormBase Gene ID /WP=CE21606 /TR=Q9XWM5 /GB=CAA21628.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_high_8_8 > 14      6grp_highest_nonorm > 91      6grp_total > 96      4grp_total > 10      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 77.1
(-2.3)
P 		86.9
(-2.1)
P 		54.3
(-3)
A 		263.2
(3)
P 		209
B 57.8
(-2.8)
A 		97.3
(-1.6)
A 		52.7
(-3)
A 		245.7
(3)
P 		193
C 64.5
(-3)
A 		104.7
(-1.9)
A 		91.1
(-2.3)
P 		285.1
(3)
P 		221
avr 66.5
(-3) 		96.3
(-2.1) 		66
(-3) 		264.7
(3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 303
1 2 3 4 5 6 range
A 162
(-1.2)
P 		75.6
(-3)
P 		99.9
(-2.5)
P 		196.8
(-0.5)
P 		343.3
(2.6)
P 		364.4
(3)
P 		289
B 83.2
(-3)
P 		103.6
(-2.5)
P 		117.4
(-2.2)
P 		189.3
(-0.5)
P 		314.4
(2.5)
P 		335.5
(3)
P 		252
C 61.8
(-3)
P 		147.8
(-1.3)
P 		92.3
(-2.4)
P 		276.3
(1.4)
P 		233
(0.5)
P 		357.3
(3)
P 		296
avr 102.3
(-3) 		109
(-2.8) 		103.2
(-3) 		220.8
(-0.2) 		296.9
(1.7) 		352.4
(3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 28.1
(0.4)
P 		18.9
(-1.8)
P 		14.2
(-3)
A 		38.5
(3)
P 		24
B 18.4
(-2.1)
A 		24
(-1.2)
A 		12.2
(-3)
A 		52.4
(3)
P 		40
C 21.4
(-3)
A 		30.1
(-1)
A 		31.7
(-0.7)
P 		48.1
(3)
P 		27
avr 22.6
(-2.3) 		24.3
(-1.9) 		19.4
(-3) 		46.3
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 29.9
(-2.4)
P 		26.9
(-2.6)
P 		21.8
(-3)
P 		49.9
(-0.9)
P 		103.6
(3)
P 		88.7
(1.9)
P 		82
B 28.9
(-3)
P 		34.5
(-2.6)
P 		28.5
(-3)
P 		50.1
(-1.7)
P 		127.7
(3)
P 		125.1
(2.8)
P 		99
C 22.9
(-3)
P 		45.1
(-1.6)
P 		23.5
(-3)
P 		55.6
(-1)
P 		75.4
(0.3)
P 		119.6
(3)
P 		97
avr 27.2
(-2.8) 		35.5
(-2.2) 		24.6
(-3) 		51.9
(-1.1) 		102.2
(2.4) 		111.1
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183328_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2717
Sequence Type Exemplar sequence
Representative Public ID Y38F1A.1 NCBI
Target Description Y38F1A.1 /REP_DB=WormBase Gene ID /WP=CE21606 /TR=Q9XWM5 /GB=CAA21628.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064358(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064358 NCBI Caenorhabditis elegans Y38F1A.1 (Y38F1A.1) mRNA, complete cds. 11/11 None
SNAP00000020276 ENSEMBL cdna:SNAP chromosome:CEL140:II:12952451:12953381:-1 11/11 None
GENEFINDER00000020301 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12952451:12953381:-1 11/11 None
Y38F1A.1 ENSEMBL cdna:known chromosome:CEL140:II:12952451:12954647:-1 gene:Y38F1A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12952447-12953378(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38F1A.1
Entrez Gene 174938 Entrez gene
SwissProt Q9XWM5 EMBL-EBI
WormBase CE32962 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21628 Hypothetical protein Y38F1A.1 [Caenorhabditis elegans] ref|NP_496759.2| Y38F1A.1 [Caenorhabditis elegans] 1.0E-137
blast CAA21628 Hypothetical protein Y38F1A.1 [Caenorhabditis elegans] ref|NP_496759.2| Y38F1A.1 [Caenorhabditis elegans] 1.0E-132
blast CAE59400 Hypothetical protein CBG02763 [Caenorhabditis briggsae] 4.0E-41
blast CAE59400 Hypothetical protein CBG02763 [Caenorhabditis briggsae] 5.0E-41
Sequence
Target Sequence 
>C. ELEGANS:183328_AT
gcggctcaagcaaatctcggatgtcaccgagccatacatcaacagcggaatctcatcggt
ggaagatcacacctcctcggttgtggagcgctgcattcaaatgctcggagcaatttctgg
acttggtggggcaatgaagaaaacggagggattgtcttcgaaagtgctcgagcatcacag
aaagctcgcgatcatggagcacaagcaagccgatgcaatttctcgctacgagaaagccgt
cggagttcagaagctcgtccgcgagcatccggctggagacccactgcacgagctcgcaaa
tcttcttggcattttcttggctctccaacaatctccgaatacgtcggagtactacaagaa
agttttcgatggatttggaggacgagtcaccgcgttgttcgccgagatagatcgtccaaa
gaccgcaaaatctctcgctacgcgttctggcatgtcaaccctgtcgagcatgagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGCTCAAGCAAATCTCGGATGTC 35 295 198 Antisense
TGTCACCGAGCCATACATCAACAGC 691 557 219 Antisense
TCAACAGCGGAATCTCATCGGTGGA 91 631 236 Antisense
TCGGTTGTGGAGCGCTGCATTCAAA 675 605 274 Antisense
GCAAGCCGATGCAATTTCTCGCTAC 118 321 402 Antisense
TCAGAAGCTCGTCCGCGAGCATCCG 47 625 444 Antisense
ACTGCACGAGCTCGCAAATCTTCTT 541 97 480 Antisense
GCATTTTCTTGGCTCTCCAACAATC 402 307 506 Antisense
TCACCGCGTTGTTCGCCGAGATAGA 259 625 584 Antisense
CAAAGACCGCAAAATCTCTCGCTAC 641 191 614 Antisense
TGTCAACCCTGTCGAGCATGAGCAA 116 559 650 Antisense
Sequence Source Affymetrix Proprietary Database