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[183326_at]

Description C30E1.8 /REP_DB=WormBase Gene ID /WP=CE08475 /TR=O17332 /GB=AAB71253.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.9
(-1.4)
A 		5.3
(-2.8)
A 		5.2
(-3)
A 		7.8
(3)
A 		3
B 2.9
(-3)
A 		6.7
(3)
A 		6
(1.9)
A 		3.6
(-1.9)
A 		4
C 2.9
(-3)
A 		20.1
(3)
A 		4
(-2.6)
A 		7.9
(-1.3)
A 		17
avr 3.9
(-3) 		10.7
(3) 		5.1
(-1.9) 		6.4
(-0.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.9
(-2.6)
A 		15.2
(0.1)
A 		26.2
(3)
A 		10.2
(-1.2)
A 		14.3
(-0.1)
A 		3.4
(-3)
A 		23
B 10.1
(0.8)
A 		9.9
(0.7)
A 		1.9
(-3)
A 		5.6
(-1.3)
A 		15
(3)
A 		2.8
(-2.6)
A 		13
C 8
(3)
A 		6
(1.1)
A 		5.9
(1)
A 		3
(-1.7)
A 		2
(-2.6)
A 		1.6
(-3)
A 		6
avr 7.7
(0.5) 		10.4
(2.4) 		11.3
(3) 		6.3
(-0.4) 		10.4
(2.4) 		2.6
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.2
(3)
A 		1.2
(-2.5)
A 		1.4
(-1.4)
A 		1.1
(-3)
A 		1
B 0.9
(-2.3)
A 		1.7
(3)
A 		1.4
(1)
A 		0.8
(-3)
A 		1
C 0.9
(-3)
A 		5.8
(3)
A 		1.4
(-2.4)
A 		1.3
(-2.5)
A 		5
avr 1.3
(-2.3) 		2.9
(3) 		1.4
(-2) 		1.1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.9
(-2.9)
A 		5.4
(2.6)
A 		5.7
(3)
A 		2.6
(-0.8)
A 		4.3
(1.3)
A 		0.8
(-3)
A 		5
B 3.5
(0.2)
A 		3.3
(-0)
A 		0.5
(-3)
A 		1.5
(-1.9)
A 		6.1
(3)
A 		1.1
(-2.4)
A 		6
C 3
(3)
A 		1.8
(0.1)
A 		1.5
(-0.6)
A 		0.6
(-2.8)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		3
avr 2.5
(0.5) 		3.5
(2.6) 		2.6
(0.7) 		1.6
(-1.3) 		3.7
(3) 		0.8
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183326_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18013
Sequence Type Exemplar sequence
Representative Public ID C30E1.8 NCBI
Target Description C30E1.8 /REP_DB=WormBase Gene ID /WP=CE08475 /TR=O17332 /GB=AAB71253.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078336(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078336 NCBI Caenorhabditis elegans C30E1.8 (C30E1.8) mRNA, complete cds. 11/11 None
SNAP00000041124 ENSEMBL cdna:SNAP chromosome:CEL140:X:16916725:16918167:-1 9/11 None
C30E1.8 ENSEMBL cdna:known chromosome:CEL140:X:16916725:16919232:-1 gene:C30E1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16916724-16919232(-) 96.63 100.0
Public Domain and Genome References
Gene Title
Ensembl C30E1.8
Entrez Gene 183051 Entrez gene
SwissProt O17332 EMBL-EBI
WormBase CE08475 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71253 Hypothetical protein C30E1.8 [Caenorhabditis elegans] ref|NP_510737.1| C30E1.8 [Caenorhabditis elegans] 0.0
blast AAB71253 Hypothetical protein C30E1.8 [Caenorhabditis elegans] ref|NP_510737.1| C30E1.8 [Caenorhabditis elegans] 2.0E-64
blast CAB04096 Hypothetical protein F11D11.3 [Caenorhabditis elegans] ref|NP_507662.1| F11D11.3 [Caenorhabditis elegans] 5.0E-48
blast AAB37611 Downstream of daf-16 (regulated by daf-16) protein 20 [Caenorhabditis elegans] ref|NP_503196.1| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-20) [Caenorhabditis elegans] 3.0E-45
blast CAB04096 Hypothetical protein F11D11.3 [Caenorhabditis elegans] ref|NP_507662.1| F11D11.3 [Caenorhabditis elegans] 5.0E-29
blast CAB04095 Hypothetical protein F11D11.4 [Caenorhabditis elegans] ref|NP_507663.1| F11D11.4 [Caenorhabditis elegans] 7.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 2.0E-39
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.2E-112
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 2.6E-87
Sequence
Target Sequence 
>C. ELEGANS:183326_AT
gtaaatttctatgacaaccccttgaagtatgaacaatcagtggttccaaatggttccttc
acaccctggggcattccaaatattgcgcagacttttgaaatttcgtcaacaaacggaaaa
gctggagagtactatgtgcaatattttgttcatcgaggaacaaagaaggaaacaactgtg
aagccaacaacaacaaccgtaactacaactacaaaaacaacgacaacgcagcaacagccc
cagactactcagtctgtagttattcagacaacagcaacatccacaattcaaaccacaact
aaatccactgtaaatgtcaagttaattgtatctacggtcactttgaatacaatttggttg
tatgatagacacgcaaattttcgaaatataattttttattcattttttccagcaattcaa
tttgatcctgcagctgtttttgcagagtccgcaaaagaggatggaacatataaggttggt
tcttctccatttaatgatgcggggcgaagcggaacacagcgcaagtgtgagcgcaaggaa
atgtcctctagttattgcttgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAAATTTCTATGACAACCCCTTGA 158 461 658 Antisense
TGGTTCCAAATGGTTCCTTCACACC 46 551 698 Antisense
TTCACACCCTGGGGCATTCCAAATA 56 687 715 Antisense
AAACAACGACAACGCAGCAACAGCC 635 127 872 Antisense
AACAGCCCCAGACTACTCAGTCTGT 275 135 890 Antisense
AATTGTATCTACGGTCACTTTGAAT 271 179 981 Antisense
AATTCAATTTGATCCTGCAGCTGTT 42 177 1071 Antisense
GCAGCTGTTTTTGCAGAGTCCGCAA 691 313 1087 Antisense
TAAGGTTGGTTCTTCTCCATTTAAT 152 637 1128 Antisense
TGATGCGGGGCGAAGCGGAACACAG 354 565 1152 Antisense
ATGTCCTCTAGTTATTGCTTGTTCA 179 49 1198 Antisense
Sequence Source Affymetrix Proprietary Database