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[183325_s_at]

Description F22D3.6 /REP_DB=WormBase Gene ID /WP=CE27139 /TR=Q19719 /GB=AAK31498.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 12      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 61      6grp_total > 23      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 607.3
(3)
P 		377
(-1.7)
P 		313.9
(-3)
P 		534.9
(1.5)
P 		293
B 651.2
(3)
P 		382.8
(-2.3)
P 		346.3
(-3)
P 		603.9
(2.1)
P 		305
C 623.1
(3)
P 		374.7
(-3)
P 		422.5
(-1.8)
P 		568.6
(1.7)
P 		248
avr 627.2
(3) 		378.2
(-2.6) 		360.9
(-3) 		569.1
(1.7) 		266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 466.8
(2)
P 		486.5
(2.5)
P 		508.4
(3)
P 		408.8
(0.6)
P 		382.1
(-0)
P 		257.8
(-3)
P 		251
B 591.6
(3)
P 		429
(-0.3)
P 		368.8
(-1.5)
P 		366.2
(-1.5)
P 		390.9
(-1)
P 		293.7
(-3)
P 		298
C 563.6
(3)
P 		497
(1.7)
P 		527.2
(2.3)
P 		409.4
(0)
P 		317.7
(-1.8)
P 		253.4
(-3)
P 		310
avr 540.7
(3) 		470.8
(1.5) 		468.1
(1.4) 		394.8
(-0.2) 		363.6
(-0.9) 		268.3
(-3) 		272
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 221.1
(3)
P 		81.8
(-2.9)
P 		82.1
(-2.8)
P 		78.3
(-3)
P 		143
B 207.7
(3)
P 		94.5
(-2.3)
P 		80.2
(-3)
P 		128.7
(-0.7)
P 		128
C 206.3
(3)
P 		107.7
(-2.4)
P 		147.3
(-0.2)
P 		95.9
(-3)
P 		110
avr 211.7
(3) 		94.7
(-3) 		103.2
(-2.6) 		101
(-2.7) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 86.1
(-1.7)
P 		173
(3)
P 		110.7
(-0.4)
P 		103.7
(-0.8)
P 		115.3
(-0.1)
P 		62.8
(-3)
P 		110
B 205.9
(3)
P 		142.8
(-0.3)
P 		89.6
(-3)
P 		97
(-2.6)
P 		158.8
(0.6)
P 		109.5
(-2)
P 		116
C 208.9
(3)
P 		151.7
(0.3)
P 		134.2
(-0.5)
P 		82.3
(-3)
P 		102.8
(-2)
P 		84.8
(-2.9)
P 		127
avr 167
(3) 		155.8
(2.2) 		111.5
(-1.1) 		94.3
(-2.4) 		125.6
(-0.1) 		85.7
(-3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183325_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5456
Sequence Type Exemplar sequence
Representative Public ID F22D3.6 NCBI
Target Description F22D3.6 /REP_DB=WormBase Gene ID /WP=CE27139 /TR=Q19719 /GB=AAK31498.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063023(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063023 NCBI Caenorhabditis elegans F22D3.6 (F22D3.6) mRNA, complete cds. 11/11 None
SNAP00000022821 ENSEMBL cdna:SNAP chromosome:CEL140:II:6947906:6951230:-1 11/11 None
GENEFINDER00000022826 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6947906:6951230:-1 11/11 None
F22D3.6 ENSEMBL cdna:known chromosome:CEL140:II:6947804:6951231:-1 gene:F22D3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6947901-6951226(-) 99.95 99.95
Public Domain and Genome References
Gene Title
Ensembl F22D3.6
Entrez Gene 174135 Entrez gene
SwissProt Q19719 EMBL-EBI
WormBase CE29773 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585866_AT similar to Mucosa associated lymphoid tissue lymphoma translocation protein 1 (MALT-lymphoma associated translocation) (Paracaspase) cfa
CANINE_2:CFA.11840.1.A1_AT similar to Mucosa associated lymphoid tissue lymphoma translocation protein 1 (MALT-lymphoma associated translocation) (Paracaspase) cfa
CANINE_2:CFAAFFX.1125.1.S1_AT similar to Mucosa associated lymphoid tissue lymphoma translocation protein 1 (MALT-lymphoma associated translocation) (Paracaspase) cfa
CANINE_2:CFAAFFX.1126.1.S1_S_AT similar to Mucosa associated lymphoid tissue lymphoma translocation protein 1 (MALT-lymphoma associated translocation) (Paracaspase) cfa
CHICKEN:GGAAFFX.25664.1.S1_AT similar to mucosa associated lymphoid tissue lymphoma translocation protein 1 isoform b; MALT associated translocation; MALT-lymphoma associated translocation; paracaspase; caspase-like protein gga
CHICKEN:GGAAFFX.25664.2.S1_S_AT similar to mucosa associated lymphoid tissue lymphoma translocation protein 1 isoform b; MALT associated translocation; MALT-lymphoma associated translocation; paracaspase; caspase-like protein gga
HG-U133_PLUS_2:208309_S_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U133A:208309_S_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U133A_2:208309_S_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U95AV2:32350_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U133A:210018_X_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U133A_2:210018_X_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U133_PLUS_2:210018_X_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HU35KSUBA:RC_AA411796_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
U133_X3P:G5803077_3P_A_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
U133_X3P:HS.180566.2.S2_3P_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U133A_2:210017_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-FOCUS:210017_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U133_PLUS_2:210017_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U133A:210017_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U95AV2:38575_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U95E:69112_R_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U95C:57942_AT Mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U95D:73482_AT Mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HG-U95D:73484_AT Mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
HU35KSUBC:RC_AA243420_AT Mucosa associated lymphoid tissue lymphoma translocation gene 1 hs
MOUSE430_2:1456126_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 mm
MOE430B:1456126_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 mm
MOUSE430_2:1456429_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 mm
MOE430B:1456429_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 mm
MG-U74CV2:133562_AT mucosa associated lymphoid tissue lymphoma translocation gene 1 mm
MOUSE430_2:1445068_AT Mucosa associated lymphoid tissue lymphoma translocation gene 1, mRNA (cDNA clone IMAGE:4013060) mm
MOE430B:1445068_AT Mucosa associated lymphoid tissue lymphoma translocation gene 1, mRNA (cDNA clone IMAGE:4013060) mm
RAE230B:1394556_AT Mucosa associated lymphoid tissue lymphoma translocation gene 1 (predicted) rn
RAT230_2:1394556_AT Mucosa associated lymphoid tissue lymphoma translocation gene 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
30693 caspase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31498 Hypothetical protein F22D3.6 [Caenorhabditis elegans] ref|NP_495424.2| F22D3.6 [Caenorhabditis elegans] gb|AAG38591.1| paracaspase [Caenorhabditis elegans] 0.0
blast T16135 hypothetical protein F22D3.6 - Caenorhabditis elegans 0.0
blast CAE66000 Hypothetical protein CBG11191 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001309 EMBL-EBI Caspase-1, p20 1.7E-46
Sequence
Target Sequence 
>C. ELEGANS:183325_S_AT
gtttgtgatcttcaagttcccgagattcgaagtacattaacacatcccagaagtctggca
gatccattaatattcgatggacatactgcttcatttgataatcatactatacattggaga
cttatgcatgaactcccaacgcctgcaacaattcgttttgaaactcaacaattagtcgct
acgatttggtttcaattttgtggaaatttcacaaacaaggtttacgtattcgcatcaata
tcagacttccgtccttgccaggaagacaccgatatgggagaaaatgaagaattaagtgaa
aatgcattgaatcatcgagcatttgttgaatttcctgaagagcttcattgttctgatgtt
cgagaatataatgatgatgaagaaggtgtctcaatgttatggattctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGTGATCTTCAAGTTCCCGAGA 414 447 1291 Antisense
GAAGTACATTAACACATCCCAGAAG 284 337 1319 Antisense
TCGATGGACATACTGCTTCATTTGA 429 603 1364 Antisense
AGACTTATGCATGAACTCCCAACGC 49 71 1408 Antisense
TCCCAACGCCTGCAACAATTCGTTT 305 597 1424 Antisense
TAGTCGCTACGATTTGGTTTCAATT 370 651 1463 Antisense
ACAAGGTTTACGTATTCGCATCAAT 542 113 1505 Antisense
TCGCATCAATATCAGACTTCCGTCC 107 601 1520 Antisense
TTCCGTCCTTGCCAGGAAGACACCG 110 697 1537 Antisense
GAGCTTCATTGTTCTGATGTTCGAG 174 389 1630 Antisense
GGTGTCTCAATGTTATGGATTCTAT 134 501 1675 Antisense
Sequence Source Affymetrix Proprietary Database