[Home] | [Total List]

[183324_at]

Description K10D11.5 /REP_DB=WormBase Gene ID /WP=CE16242 /TR=O17948 /GB=CAB03524.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 62      4grp_high_8_8 > 62      6grp_highest_nonorm > 91      6grp_total > 63      4grp_total > 57      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 433
1 2 3 4 range
A 175.7
(-1.7)
P 		358.7
(1.3)
P 		460.9
(3)
P 		94.3
(-3)
A 		367
B 271
(0.9)
P 		352.5
(2.4)
P 		386.8
(3)
P 		62.1
(-3)
P 		325
C 164.8
(-1.9)
P 		296.8
(0.1)
P 		495.5
(3)
P 		90.2
(-3)
P 		405
avr 203.8
(-1) 		336
(1.2) 		447.7
(3) 		82.2
(-3) 		366

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 168.8
(-3)
P 		173.7
(-2.8)
P 		308.8
(2.7)
P 		233.6
(-0.4)
P 		315.8
(3)
P 		230.6
(-0.5)
P 		147
B 124.5
(-3)
P 		236.2
(1)
P 		291.7
(3)
P 		247
(1.4)
P 		196.6
(-0.4)
P 		185.8
(-0.8)
P 		167
C 162.8
(-3)
P 		236.7
(1)
P 		240.8
(1.2)
P 		275
(3)
P 		189.8
(-1.6)
P 		191.8
(-1.4)
P 		112
avr 152
(-3) 		215.5
(-0) 		280.4
(3) 		251.9
(1.7) 		234.1
(0.8) 		202.7
(-0.6) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 64
(-0.2)
P 		77.9
(0.6)
P 		120.5
(3)
P 		13.8
(-3)
A 		107
B 86.4
(2.7)
P 		87.1
(2.8)
P 		89.6
(3)
P 		13.2
(-3)
P 		76
C 54.6
(-1.5)
P 		85.3
(-0.3)
P 		172.7
(3)
P 		15.2
(-3)
P 		158
avr 68.3
(-0.1) 		83.4
(0.7) 		127.6
(3) 		14.1
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 31.1
(-3)
P 		61.8
(-0.1)
P 		67.2
(0.4)
P 		59.3
(-0.4)
P 		95.3
(3)
P 		56.2
(-0.7)
P 		64
B 43.3
(-3)
P 		78.6
(2.8)
P 		70.8
(1.5)
P 		65.4
(0.6)
P 		79.9
(3)
P 		69.3
(1.3)
P 		37
C 60.4
(-1.2)
P 		72.2
(3)
P 		61.3
(-0.9)
P 		55.3
(-3)
P 		61.4
(-0.8)
P 		64.2
(0.2)
P 		17
avr 44.9
(-3) 		70.9
(1.6) 		66.4
(0.8) 		60
(-0.3) 		78.9
(3) 		63.2
(0.2) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183324_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10145
Sequence Type Exemplar sequence
Representative Public ID K10D11.5 NCBI
Target Description K10D11.5 /REP_DB=WormBase Gene ID /WP=CE16242 /TR=O17948 /GB=CAB03524.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070089(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070089 NCBI Caenorhabditis elegans K10D11.5 (K10D11.5) mRNA, complete cds. 11/11 None
SNAP00000011398 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12986772:12991750:-1 10/11 None
GENEFINDER00000011402 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12989696:12994432:-1 11/11 None
K10D11.5 ENSEMBL cdna:known chromosome:CEL140:IV:12989677:12991774:-1 gene:K10D11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12989701-12991756(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D11.5
Entrez Gene 187270 Entrez gene
SwissProt O17948 EMBL-EBI
WormBase CE16242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03524 Hypothetical protein K10D11.5 [Caenorhabditis elegans] ref|NP_502490.1| K10D11.5 [Caenorhabditis elegans] 0.0
blast CAB03523 Hypothetical protein K10D11.4 [Caenorhabditis elegans] ref|NP_502491.1| K10D11.4 [Caenorhabditis elegans] 0.0
blast CAE56629 Hypothetical protein CBG24385 [Caenorhabditis briggsae] 1.0E-153
blast CAE56628 Hypothetical protein CBG24384 [Caenorhabditis briggsae] 1.0E-138
blast CAE56628 Hypothetical protein CBG24384 [Caenorhabditis briggsae] 1.0E-137
blast CAB03522 Hypothetical protein K10D11.3 [Caenorhabditis elegans] ref|NP_502488.2| K10D11.3 [Caenorhabditis elegans] 9.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.2E-40
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.5E-29
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.2E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502490.1 1 476-493
K10D11.5 1 476-493
GENEFINDER00000011402 1 917-934
Sequence
Target Sequence 
>C. ELEGANS:183324_AT
aatgcattcctcaacttcacaagatcctcctctcaatttagttccaatgctcgaattggg
agaaaaggattctttgcatcgcgttacttcaaatcaggttcaccgtctaaatatcaggat
ggtaacgatttcctaagaaccactaacagtcaagtcgtcaacttttccttctccattgta
gaagcatattttgtgggaaacacgacgttgagaatttcagtttatagtggatcaaaatgt
acttataaccaaacttacacatcttccaaccagccaacactaaacgtcaaggttcaagct
ctgggtgatcgatttagttccagttacaatacttatggttacagtacaaatggattctat
atgaactacgagcttctgaaatcttctggagctcccaggatctttgtaattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCATTCCTCAACTTCACAAGAT 132 165 1054 Antisense
CAAGATCCTCCTCTCAATTTAGTTC 450 185 1073 Antisense
AAGGATTCTTTGCATCGCGTTACTT 351 159 1118 Antisense
GTTACTTCAAATCAGGTTCACCGTC 35 447 1136 Antisense
AGTCAAGTCGTCAACTTTTCCTTCT 182 61 1201 Antisense
TAACCAAACTTACACATCTTCCAAC 589 635 1299 Antisense
TCCAACCAGCCAACACTAAACGTCA 100 587 1318 Antisense
AACGTCAAGGTTCAAGCTCTGGGTG 557 143 1336 Antisense
GGGTGATCGATTTAGTTCCAGTTAC 199 495 1356 Antisense
GCTTCTGAAATCTTCTGGAGCTCCC 422 305 1425 Antisense
GAGCTCCCAGGATCTTTGTAATTAT 706 379 1442 Antisense
Sequence Source Affymetrix Proprietary Database