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[183323_at]

Description K11C4.2 /REP_DB=WormBase Gene ID /WP=CE12110 /TR=Q94276 /GB=AAB18315.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 03      4grp_highest_8_8 > 63      4grp_high_8_8 > 19      6grp_highest_nonorm > 70      6grp_total > 25      4grp_total > 29      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 281.1
(1.8)
P 		309.4
(2.7)
P 		142.8
(-3)
P 		316.8
(3)
P 		174
B 294.3
(3)
P 		231.9
(-0.5)
P 		187.6
(-3)
P 		284.7
(2.5)
P 		107
C 297
(1.8)
P 		252.8
(-2)
P 		240.6
(-3)
P 		310.4
(3)
P 		70
avr 290.8
(2.3) 		264.7
(0.9) 		190.3
(-3) 		304
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 373
(3)
P 		340.2
(2)
P 		273.4
(0)
P 		177.6
(-2.8)
P 		224.6
(-1.4)
P 		171.8
(-3)
P 		201
B 432.3
(3)
P 		407.6
(2.3)
P 		376.2
(1.5)
P 		213.2
(-3)
P 		219
(-2.8)
P 		258.5
(-1.8)
P 		219
C 283.2
(0.1)
P 		389.5
(3)
P 		254.5
(-0.7)
P 		287.2
(0.2)
P 		168.2
(-3)
P 		244.8
(-0.9)
P 		221
avr 362.8
(2.4) 		379.1
(3) 		301.4
(0.3) 		226
(-2.2) 		203.9
(-3) 		225
(-2.3) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 102.3
(3)
P 		67.2
(-0.2)
P 		37.3
(-3)
P 		46.4
(-2.2)
P 		65
B 93.8
(3)
P 		57.3
(-1.4)
P 		43.5
(-3)
P 		60.7
(-0.9)
P 		50
C 98.3
(3)
P 		72.7
(-0.3)
P 		83.9
(1.1)
P 		52.3
(-3)
P 		46
avr 98.1
(3) 		65.7
(-1.3) 		54.9
(-2.8) 		53.1
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 68.8
(-1)
P 		121
(3)
P 		59.5
(-1.7)
P 		45
(-2.8)
P 		67.8
(-1)
P 		41.8
(-3)
P 		79
B 150.4
(3)
P 		135.7
(2.1)
P 		91.4
(-0.8)
P 		56.5
(-3)
P 		89
(-0.9)
P 		96.4
(-0.5)
P 		94
C 105
(1.7)
P 		118.8
(3)
P 		64.8
(-2)
P 		57.8
(-2.7)
P 		54.4
(-3)
P 		82
(-0.4)
P 		64
avr 108.1
(1.6) 		125.2
(3) 		71.9
(-1.4) 		53.1
(-3) 		70.4
(-1.6) 		73.4
(-1.3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11324
Sequence Type Exemplar sequence
Representative Public ID K11C4.2 NCBI
Target Description K11C4.2 /REP_DB=WormBase Gene ID /WP=CE12110 /TR=Q94276 /GB=AAB18315.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072349(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072349 NCBI Caenorhabditis elegans K11C4.2 (K11C4.2) mRNA, complete cds. 11/11 None
SNAP00000040593 ENSEMBL cdna:SNAP chromosome:CEL140:V:6897681:6899354:1 11/11 None
GENEFINDER00000040642 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6897681:6899354:1 11/11 None
K11C4.2 ENSEMBL cdna:known chromosome:CEL140:V:6896516:6899354:1 gene:K11C4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6896516-6899355(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K11C4.2
Entrez Gene 187288 Entrez gene
SwissProt Q94276 EMBL-EBI
WormBase CE12110 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB18315 Hypothetical protein K11C4.2 [Caenorhabditis elegans] ref|NP_504750.1| K11C4.2 [Caenorhabditis elegans] 0.0
blast CAE71968 Hypothetical protein CBG19039 [Caenorhabditis briggsae] 1.0E-156
blast AAB18315 Hypothetical protein K11C4.2 [Caenorhabditis elegans] ref|NP_504750.1| K11C4.2 [Caenorhabditis elegans] 1.0E-146
blast CAE71968 Hypothetical protein CBG19039 [Caenorhabditis briggsae] 1.0E-134
blast AAH34015 Progestin and adipoQ receptor family member VII [Homo sapiens] 8.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR004254 EMBL-EBI Hly-III related proteins 1.9E-62
Pfam IPR004254 EMBL-EBI Hly-III related proteins 6.1E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504750.1 6 68-87,97-119,128-147,162-184,196-213,295-317
K11C4.2 6 68-87,97-119,128-147,162-184,196-213,295-317
SNAP00000040593 6 42-61,71-93,102-121,136-158,170-187,269-291
GENEFINDER00000040642 6 42-61,71-93,102-121,136-158,170-187,269-291
Sequence
Target Sequence 
>C. ELEGANS:183323_AT
tggaattgcgcttttcggaatcacaattggattgcaacgctatagctccagtgatgatat
gagtttgattatgaaaattatttatgtacctcttctccttgtcgttgttcttggcggtca
gtacttttcaacgtgctacctcttcgtgtataagccacactacaaacgacgaatggagct
acgaatgggctcttgcttccttcttgcatgctggctctacattccattgcactatagata
tcaatccgaaggaagcgggggtgacgctgctcttcctctacactcgagagcttttcaatg
gcttgtgttctctggaattttcatgggagctcatattcctgaacgatttgctccgggagt
tttcgatattgttggttatggacatcagctcttccatttgtgcatcgacatggttgcttg
gaatctccttgatgcggctcacatcgactgctcgagtgacgaaggacatgttcatttgcc
tcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATTGCGCTTTTCGGAATCACA 125 545 420 Antisense
GGATTGCAACGCTATAGCTCCAGTG 566 507 448 Antisense
AAATTATTTATGTACCTCTTCTCCT 502 115 494 Antisense
TGTTCTTGGCGGTCAGTACTTTTCA 494 561 525 Antisense
GCTACCTCTTCGTGTATAAGCCACA 245 271 554 Antisense
GAGCTACGAATGGGCTCTTGCTTCC 665 385 595 Antisense
TGGCTCTACATTCCATTGCACTATA 83 545 631 Antisense
TCCTGAACGATTTGCTCCGGGAGTT 710 585 756 Antisense
GACATGGTTGCTTGGAATCTCCTTG 654 369 826 Antisense
GCTCACATCGACTGCTCGAGTGACG 53 301 856 Antisense
GAAGGACATGTTCATTTGCCTCGAA 450 333 880 Antisense
Sequence Source Affymetrix Proprietary Database