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[183322_at]

Description C06A12.3 /REP_DB=WormBase Gene ID /WP=CE18487 /TR=Q9XU41 /GB=CAB06041.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 64      6grp_total > 94      4grp_total > 11      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 442
1 2 3 4 range
A 441.1
(-2.7)
P 		534.4
(-1.1)
P 		424
(-3)
P 		763.8
(3)
P 		340
B 470.7
(-1.9)
P 		416.2
(-2.7)
P 		392.8
(-3)
P 		832.3
(3)
P 		440
C 485
(-1.5)
P 		412.8
(-2.6)
P 		390.7
(-3)
P 		761.6
(3)
P 		371
avr 465.6
(-2) 		454.5
(-2.2) 		402.5
(-3) 		785.9
(3) 		383

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 730
1 2 3 4 5 6 range
A 521
(-3)
P 		595.1
(-2.1)
P 		617
(-1.9)
P 		815.9
(0.4)
P 		1043
(3)
P 		668.9
(-1.3)
P 		522
B 433.6
(-3)
P 		560.7
(-1.9)
P 		578.2
(-1.7)
P 		754.7
(-0.2)
P 		1116.5
(3)
P 		750
(-0.2)
P 		683
C 386.1
(-3)
P 		620.9
(-1)
P 		615.3
(-1)
P 		701.3
(-0.3)
P 		1086.5
(3)
P 		805.6
(0.6)
P 		700
avr 446.9
(-3) 		592.2
(-1.6) 		603.5
(-1.5) 		757.3
(-0.1) 		1082
(3) 		741.5
(-0.2) 		635
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 160.6
(3)
P 		116
(-2.4)
P 		110.8
(-3)
P 		111.8
(-2.9)
P 		50
B 150.1
(1.1)
P 		102.8
(-2.2)
P 		91
(-3)
P 		177.4
(3)
P 		86
C 160.5
(3)
P 		118.7
(-3)
P 		136.2
(-0.5)
P 		128.4
(-1.6)
P 		42
avr 157.1
(3) 		112.5
(-3) 		112.7
(-3) 		139.2
(0.6) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 358
1 2 3 4 5 6 range
A 96
(-3)
P 		211.7
(0.2)
P 		134.4
(-1.9)
P 		206.9
(0)
P 		314.7
(3)
P 		162.8
(-1.2)
P 		219
B 150.9
(-2.8)
P 		186.6
(-2.1)
P 		140.4
(-3)
P 		199.9
(-1.9)
P 		453.6
(3)
P 		279.7
(-0.3)
P 		313
C 143.1
(-2.9)
P 		189.5
(-1.6)
P 		156.6
(-2.6)
P 		141
(-3)
P 		351.6
(3)
P 		269.7
(0.7)
P 		211
avr 130
(-3) 		195.9
(-1.4) 		143.8
(-2.7) 		182.6
(-1.7) 		373.3
(3) 		237.4
(-0.4) 		243
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10162
Sequence Type Exemplar sequence
Representative Public ID C06A12.3 NCBI
Target Description C06A12.3 /REP_DB=WormBase Gene ID /WP=CE18487 /TR=Q9XU41 /GB=CAB06041.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070707 NCBI Caenorhabditis elegans C06A12.3 (C06A12.3) mRNA, complete cds. 11/11 None
SNAP00000012312 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17427683:17429439:1 11/11 None
GENEFINDER00000012317 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17427683:17429521:1 11/11 None
C06A12.3 ENSEMBL cdna:known chromosome:CEL140:IV:17427683:17429439:1 gene:C06A12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17427688-17429445(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06A12.3
Entrez Gene 178529 Entrez gene
SwissProt Q9XU41 EMBL-EBI
WormBase CE18487 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB06041 Hypothetical protein C06A12.3 [Caenorhabditis elegans] ref|NP_503108.1| C06A12.3 [Caenorhabditis elegans] 1.0E-132
blast CAB06041 Hypothetical protein C06A12.3 [Caenorhabditis elegans] ref|NP_503108.1| C06A12.3 [Caenorhabditis elegans] 1.0E-128
blast CAE57429 Hypothetical protein CBG00388 [Caenorhabditis briggsae] 1.0E-124
blast CAE57429 Hypothetical protein CBG00388 [Caenorhabditis briggsae] 1.0E-122
blast CAA21509 Hypothetical protein Y43F8B.2a [Caenorhabditis elegans] ref|NP_507796.1| Y43F8B.2a [Caenorhabditis elegans] 1.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR007967 EMBL-EBI Protein of unknown function DUF727 3.2E-75
Pfam IPR007967 EMBL-EBI Protein of unknown function DUF727 2.5E-73
Sequence
Target Sequence 
>C. ELEGANS:183322_AT
gaaggtttcaccgctctataagcaacaagattctgctcgttggaacgcggccgctcaagt
gtaccggacgtctcgtgccgtctcaccaacgttggaagaaaaagagaaatttgggtttga
caatgcgtatataaatcaaatgattagtccgaaaatgtcaatcccaaagaccccaatttc
actcgaggaaatcgcagatatgaatagaaaacgtcacgaagtggaaggtggagttattcc
gtcagatgatgacgttggaccgctggaactggaagcaattgctgcagtccacgaattagc
acatgaagttcaagacatcagtgtttcggaaatgctccccagaactagtgacctgatttt
tgttaatgtgaaaactcaggaaggaagcccatacactttagagctgactatgaaaggatg
gagaattgcttcgtcccatactgattgcatgaacggggattatacgaaaatctcccttca
cactaaatactatcgaaatgctcgtgaacttttgaaattcatatcacctgaccatgcaac
acgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTTTCACCGCTCTATAAGCAA 528 333 174 Antisense
ACAAGATTCTGCTCGTTGGAACGCG 70 113 198 Antisense
TGCCGTCTCACCAACGTTGGAAGAA 693 583 249 Antisense
GATGATGACGTTGGACCGCTGGAAC 135 411 418 Antisense
GCAATTGCTGCAGTCCACGAATTAG 12 323 448 Antisense
TCAGTGTTTCGGAAATGCTCCCCAG 395 621 491 Antisense
TGCTCCCCAGAACTAGTGACCTGAT 469 581 506 Antisense
GAAGCCCATACACTTTAGAGCTGAC 403 343 557 Antisense
TTGCTTCGTCCCATACTGATTGCAT 106 701 599 Antisense
AATCTCCCTTCACACTAAATACTAT 572 169 642 Antisense
ATATCACCTGACCATGCAACACGAT 197 21 694 Antisense
Sequence Source Affymetrix Proprietary Database