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[183321_at]

Description F17E9.7 /REP_DB=WormBase Gene ID /WP=CE07073 /TR=O61520 /GB=AAC05109.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 52      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 41.7
(3)
A 		34
(-0.1)
A 		37.1
(1.2)
A 		26.7
(-3)
A 		15
B 20.7
(-1.4)
A 		46.5
(3)
A 		22.7
(-1.1)
A 		11.6
(-3)
A 		35
C 26.2
(3)
A 		9.5
(-1.2)
A 		2.2
(-3)
A 		2.7
(-2.9)
A 		24
avr 29.5
(2.8) 		30
(3) 		20.7
(-0.4) 		13.7
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 55.3
(3)
A 		5.6
(-3)
A 		22
(-1)
A 		30.8
(0)
A 		35.4
(0.6)
A 		21.2
(-1.1)
A 		50
B 31.1
(3)
A 		24
(1.5)
A 		10.9
(-1.4)
A 		4.4
(-2.8)
A 		13.4
(-0.9)
A 		3.6
(-3)
A 		28
C 21.3
(-1)
A 		46.8
(3)
A 		35.5
(1.2)
A 		32.7
(0.8)
A 		8.3
(-3)
A 		23.3
(-0.7)
A 		39
avr 35.9
(3) 		25.5
(-0.1) 		22.8
(-0.9) 		22.6
(-1) 		19
(-2.1) 		16
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.2
(3)
A 		7.4
(-1.1)
A 		9.7
(0.1)
A 		3.9
(-3)
A 		11
B 6.6
(-0.3)
A 		11.5
(3)
A 		5.3
(-1.1)
A 		2.5
(-3)
A 		9
C 8.7
(3)
A 		2.7
(-1.3)
A 		0.8
(-2.7)
A 		0.4
(-3)
A 		8
avr 10.2
(3) 		7.2
(0.7) 		5.3
(-0.7) 		2.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.2
(2.7)
A 		2
(-3)
A 		4.8
(-1.1)
A 		7.8
(1)
A 		10.7
(3)
A 		5.2
(-0.8)
A 		9
B 10.8
(3)
A 		8
(1.3)
A 		2.6
(-2.1)
A 		1.2
(-3)
A 		5.4
(-0.4)
A 		1.3
(-2.9)
A 		10
C 7.9
(-0.3)
A 		14.3
(3)
A 		9
(0.3)
A 		6.6
(-1)
A 		2.7
(-3)
A 		7.8
(-0.4)
A 		12
avr 9.6
(3) 		8.1
(1.1) 		5.5
(-2.1) 		5.2
(-2.5) 		6.3
(-1.1) 		4.8
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10348
Sequence Type Exemplar sequence
Representative Public ID F17E9.7 NCBI
Target Description F17E9.7 /REP_DB=WormBase Gene ID /WP=CE07073 /TR=O61520 /GB=AAC05109.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069010 NCBI Caenorhabditis elegans F17E9.7 (F17E9.7) mRNA, complete cds. 11/11 None
SNAP00000000484 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8340339:8344104:1 11/11 None
GENEFINDER00000000502 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8339848:8346486:1 11/11 None
F17E9.7 ENSEMBL cdna:known chromosome:CEL140:IV:8342922:8344104:1 gene:F17E9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8342927-8344110(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17E9.7
Entrez Gene 184620 Entrez gene
SwissProt O61520 EMBL-EBI
WormBase CE07073 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
6811 ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
45211 postsynaptic membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5230 extracellular ligand-gated ion channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC05108 Hypothetical protein F17E9.8 [Caenorhabditis elegans] ref|NP_501410.1| F17E9.8 [Caenorhabditis elegans] 1.0E-178
blast AAC05109 Hypothetical protein F17E9.7 [Caenorhabditis elegans] ref|NP_501411.1| F17E9.7 [Caenorhabditis elegans] 1.0E-138
blast AAC05109 Hypothetical protein F17E9.7 [Caenorhabditis elegans] ref|NP_501411.1| F17E9.7 [Caenorhabditis elegans] 1.0E-137
blast AAC05109 Hypothetical protein F17E9.7 [Caenorhabditis elegans] ref|NP_501411.1| F17E9.7 [Caenorhabditis elegans] 1.0E-129
blast AAC05108 Hypothetical protein F17E9.8 [Caenorhabditis elegans] ref|NP_501410.1| F17E9.8 [Caenorhabditis elegans] 1.0E-123
blast AAC05108 Hypothetical protein F17E9.8 [Caenorhabditis elegans] ref|NP_501410.1| F17E9.8 [Caenorhabditis elegans] 1.0E-105
blast AAC05107 Hypothetical protein F17E9.5 [Caenorhabditis elegans] ref|NP_501412.1| F17E9.5 [Caenorhabditis elegans] 8.0E-85
blast CAB16504 Hypothetical protein Y57G11C.2 [Caenorhabditis elegans] ref|NP_502777.2| Y57G11C.2 [Caenorhabditis elegans] 3.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 4.5E-29
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 1.3E-20
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 7.0E-31
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 8.1E-28
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 8.7E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501411.1 3 173-195,205-224,237-259
F17E9.7 3 173-195,205-224,237-259
SNAP00000000484 5 149-171,213-235,453-475,485-504,517-539
GENEFINDER00000000502 8 261-283,296-315,325-347,637-659,701-723,803-825,835-854,879-901
Sequence
Target Sequence 
>C. ELEGANS:183321_AT
aatccgtacaagtcttccagcagttgtaagcacttcttgtccactaaacattcaagattt
tccacatgatgttcaagaatgtaatatatcaatggggtcatgggcgtttgatcgaactgt
tattgttgtacagtcatcggtggacgagattcttccactgaggggaagatttgaaggaaa
cagtgaatgggaacttttgtcaattcgtgcattccgcaccgattcatttgaatattcgct
aggaacttcattttctgaaattacatacactgttacattgcagcgaaaaccagtgtatta
tgtacttgttattcaggctcccactttcattttatgcaccattacaatatttggactctt
ctcaccaaacagtaatgagaatgaacgcctttctagagttgagctgtgcttgaatatgtt
tgctgcaatttcaatgatgcttcaattagtttccgatatgatgcccaaagcctcgcgtct
tccattactaggcaactatattattgctgaaatttttgtggttactgcagctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCGTACAAGTCTTCCAGCAGTT 201 167 237 Antisense
GTAAGCACTTCTTGTCCACTAAACA 132 463 262 Antisense
GGGTCATGGGCGTTTGATCGAACTG 525 495 331 Antisense
TGGACGAGATTCTTCCACTGAGGGG 502 537 377 Antisense
AACTTTTGTCAATTCGTGCATTCCG 228 139 428 Antisense
GCATTCCGCACCGATTCATTTGAAT 668 307 445 Antisense
TTACAATATTTGGACTCTTCTCACC 119 685 578 Antisense
ACGCCTTTCTAGAGTTGAGCTGTGC 121 91 621 Antisense
GATGCTTCAATTAGTTTCCGATATG 626 413 672 Antisense
TCGCGTCTTCCATTACTAGGCAACT 84 601 709 Antisense
AAATTTTTGTGGTTACTGCAGCTAC 125 117 746 Antisense
Sequence Source Affymetrix Proprietary Database