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[183319_at]

Description C24A8.2 /REP_DB=WormBase Gene ID /WP=CE08338 /TR=P91095 /GB=AAK39180.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 28      6grp_cgc > 04      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 51.6
(0.1)
P 		52
(0.2)
A 		10.7
(-3)
A 		89.3
(3)
A 		79
B 68.6
(-0.9)
P 		121.5
(3)
A 		40.8
(-3)
A 		60
(-1.6)
A 		81
C 62.1
(1.5)
A 		30.8
(-3)
A 		39.5
(-1.7)
A 		72.3
(3)
P 		42
avr 60.8
(1.2) 		68.1
(2.2) 		30.3
(-3) 		73.9
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 57.5
(3)
A 		32.6
(-2.7)
A 		49.1
(1.1)
A 		31.4
(-3)
A 		35.8
(-2)
A 		35
(-2.2)
A 		26
B 63
(3)
M 		55.5
(1.6)
M 		59
(2.2)
A 		31.6
(-3)
A 		58.8
(2.2)
A 		32.8
(-2.8)
A 		31
C 49.2
(-0.7)
P 		83.8
(3)
A 		27.6
(-3)
A 		38.6
(-1.8)
A 		49
(-0.7)
A 		59.8
(0.4)
A 		56
avr 56.6
(2.8) 		57.3
(3) 		45.2
(-0.1) 		33.9
(-3) 		47.9
(0.6) 		42.5
(-0.8) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 18.8
(3)
P 		11.3
(0.2)
A 		2.8
(-3)
A 		13.1
(0.9)
A 		16
B 21.9
(0.6)
P 		30
(3)
A 		9.5
(-3)
A 		12.8
(-2)
A 		21
C 20.5
(3)
A 		8.9
(-3)
A 		13.8
(-0.5)
A 		12.2
(-1.3)
P 		12
avr 20.4
(3) 		16.7
(1.1) 		8.7
(-3) 		12.7
(-0.9) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 10.6
(1.3)
A 		11.6
(3)
A 		10.7
(1.5)
A 		8
(-3)
A 		10.8
(1.7)
A 		8.5
(-2.2)
A 		4
B 21.9
(2.2)
M 		18.5
(0.9)
M 		14.3
(-0.7)
A 		8.4
(-3)
A 		23.9
(3)
A 		12.2
(-1.5)
A 		16
C 18.2
(0.6)
P 		25.6
(3)
A 		7
(-3)
A 		7.8
(-2.7)
A 		15.9
(-0.1)
A 		20
(1.2)
A 		19
avr 16.9
(2) 		18.6
(3) 		10.7
(-1.5) 		8.1
(-3) 		16.9
(2) 		13.6
(0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17302
Sequence Type Exemplar sequence
Representative Public ID C24A8.2 NCBI
Target Description C24A8.2 /REP_DB=WormBase Gene ID /WP=CE08338 /TR=P91095 /GB=AAK39180.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C24A8.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C24A8.2 C24A8.2 /REP_DB=WormBase Gene ID /WP=CE08338 /TR=P91095 /GB=AAK39180.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036351 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4303246-4305461(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:183319_AT
tcggtggtccatgctgttgttgaaaaccttcctcttgatgacctccctgatgaacttgtt
gcattggttgcccttgttgcggctgttgggacattggatcttgttgcatttgttgcatat
tcatcatttgatcaggaatattctgaggattgtgaggcccttgttgcatggatctgtttt
gctgcatttgatgttgtggctgccgctttatgttcggggctacgttttttttttcaaaaa
tcgctaattacaacatactgtatgtttattgctattataattgtatttttcaatcaattt
ctatgtatttgtgacaaaattgccgtctccaatagttttttttttcaattacctgtggtt
cttgctgttgaatccgaatttgctgttgtggtggcatgttcatgttcggagcattttgct
gcatttgctgatgctgaagaggctgctgctgatgaggtgatccgttgttcatattttgat
tgttttgttgaatttgttgcattctcatttgctgctgcggcggcgtgttcatactcgatg
ggccttgttgtatctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGTGGTCCATGCTGTTGTTGAAA 86 607 382 Antisense
TTGAAAACCTTCCTCTTGATGACCT 345 701 401 Antisense
TGACCTCCCTGATGAACTTGTTGCA 94 571 420 Antisense
ACTTGTTGCATTGGTTGCCCTTGTT 417 103 435 Antisense
TTGTGAGGCCCTTGTTGCATGGATC 500 703 531 Antisense
GCATGGATCTGTTTTGCTGCATTTG 420 311 547 Antisense
CTGCCGCTTTATGTTCGGGGCTACG 666 235 581 Antisense
ATTACCTGTGGTTCTTGCTGTTGAA 511 13 729 Antisense
GAATCCGAATTTGCTGTTGTGGTGG 618 329 751 Antisense
GGCTGCTGCTGATGAGGTGATCCGT 678 539 822 Antisense
CTCGATGGGCCTTGTTGTATCTGCA 345 233 915 Antisense
Sequence Source Affymetrix Proprietary Database