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[183318_at]

Description F23D12.5 /REP_DB=WormBase Gene ID /WP=CE15893 /TR=Q19760 /GB=CAA94916.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 67.5
(3)
A 		9.9
(-3)
A 		9.5
(-3)
A 		12.2
(-2.7)
A 		58
B 39.3
(2.2)
A 		6.5
(-3)
A 		9.9
(-2.5)
A 		44.1
(3)
A 		38
C 67.7
(3)
A 		9.8
(-3)
A 		21
(-1.8)
A 		67.9
(3)
A 		58
avr 58.2
(3) 		8.7
(-3) 		13.5
(-2.4) 		41.4
(1) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 59.2
(1.3)
A 		9.8
(-2.4)
A 		2.3
(-3)
A 		2.5
(-3)
A 		28.5
(-1)
A 		81.8
(3)
A 		80
B 52.9
(3)
A 		8
(-2.4)
A 		25.3
(-0.3)
A 		3.4
(-3)
A 		8
(-2.4)
A 		37.4
(1.1)
A 		50
C 62.5
(3)
A 		8.8
(-2.4)
A 		3.4
(-2.9)
A 		26.4
(-0.6)
A 		2.4
(-3)
A 		47.5
(1.5)
A 		60
avr 58.2
(3) 		8.9
(-3) 		10.3
(-2.8) 		10.8
(-2.8) 		13
(-2.5) 		55.6
(2.7) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 24.6
(3)
A 		2.1
(-2.9)
A 		2.5
(-2.8)
A 		1.8
(-3)
A 		23
B 12.5
(3)
A 		1.6
(-3)
A 		2.3
(-2.6)
A 		9.4
(1.3)
A 		11
C 22.4
(3)
A 		2.8
(-3)
A 		7.3
(-1.6)
A 		11.4
(-0.4)
A 		20
avr 19.8
(3) 		2.2
(-3) 		4
(-2.4) 		7.5
(-1.2) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 10.9
(0.2)
A 		3.5
(-2.1)
A 		0.5
(-3)
A 		0.6
(-3)
A 		8.6
(-0.5)
A 		19.9
(3)
A 		19
B 18.4
(3)
A 		2.7
(-2.4)
A 		6.1
(-1.2)
A 		0.9
(-3)
A 		3.3
(-2.2)
A 		13.9
(1.5)
A 		18
C 23.2
(3)
A 		2.7
(-2.5)
A 		0.9
(-3)
A 		5.3
(-1.8)
A 		0.8
(-3)
A 		15.9
(1)
A 		22
avr 17.5
(3) 		3
(-2.7) 		2.5
(-2.9) 		2.3
(-3) 		4.2
(-2.3) 		16.6
(2.6) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183318_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17533
Sequence Type Exemplar sequence
Representative Public ID F23D12.5 NCBI
Target Description F23D12.5 /REP_DB=WormBase Gene ID /WP=CE15893 /TR=Q19760 /GB=CAA94916.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078004 NCBI Caenorhabditis elegans F23D12.5 (F23D12.5) mRNA, complete cds. 11/11 None
SNAP00000042575 ENSEMBL cdna:SNAP chromosome:CEL140:X:14448149:14452605:1 10/11 None
GENEFINDER00000042576 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14448149:14453307:1 11/11 None
F23D12.5 ENSEMBL cdna:known chromosome:CEL140:X:14448143:14453481:1 gene:F23D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14448148-14453307(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23D12.5
Entrez Gene 181543 Entrez gene
SwissProt Q19760 EMBL-EBI
WormBase CE15893 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94916 Hypothetical protein F23D12.5 [Caenorhabditis elegans] ref|NP_510405.1| F23D12.5 [Caenorhabditis elegans] 0.0
blast CAE75126 Hypothetical protein CBG23054 [Caenorhabditis briggsae] 1.0E-94
blast CAE61441 Hypothetical protein CBG05328 [Caenorhabditis briggsae] 3.0E-90
blast CAE61441 Hypothetical protein CBG05328 [Caenorhabditis briggsae] 5.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 9.0E-47
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 9.0E-47
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 9.0E-47
Sequence
Target Sequence 
>C. ELEGANS:183318_AT
aaagcgggtactggccaagtgagcaggaattaagaaatgaaaagataccatcgcaaaagt
ttctacaaaagcctggagacatggtgtacgtcggtattggaacatttcattgggtgcaat
ctaatgattttgcaataaacgtctcctggaatgttgcacaaccaacttttaatcaactgg
ctgctgcaatggtcattcacgatcacaacatctcgagtaaagcaactactctcatgccta
ttgagccaattgtctggaaaatggctgaagatggagtggaggcagaggatgagaatattt
tcctggctcgaaaggctataatgctaaaaagtttggcaaaaagccagtttgagttcgatt
tcgccattcaggaaaatatgctcatcagatcagcaaaaaacgagaaatcgatcatccctg
ttgagcgatgctctatccaaaaatgccgggaagttctgttcaatatgatcacacttgaca
ataagcaaaatccattctgccttaattgcatagttaaaggaaaagtcaaagcaacagcat
ttcaaaggcgggacattgctgacttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCGGGTACTGGCCAAGTGAGCA 64 125 2015 Antisense
GCCTGGAGACATGGTGTACGTCGGT 685 281 2085 Antisense
ACGTCTCCTGGAATGTTGCACAACC 241 95 2153 Antisense
ACTGGCTGCTGCAATGGTCATTCAC 146 97 2190 Antisense
GGTCATTCACGATCACAACATCTCG 563 503 2205 Antisense
AAAGCAACTACTCTCATGCCTATTG 700 123 2233 Antisense
GCCAGTTTGAGTTCGATTTCGCCAT 581 279 2357 Antisense
AGAAATCGATCATCCCTGTTGAGCG 88 73 2417 Antisense
GAGCGATGCTCTATCCAAAAATGCC 104 385 2437 Antisense
AAATCCATTCTGCCTTAATTGCATA 242 119 2502 Antisense
AAAGGCGGGACATTGCTGACTTGGT 397 121 2558 Antisense
Sequence Source Affymetrix Proprietary Database