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[183317_at]

Description R09B5.1 /REP_DB=WormBase Gene ID /WP=CE12618 /TR=O44617 /GB=AAB94210.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 4.1
(-3)
A 		69
(1.9)
A 		9.3
(-2.6)
A 		84.1
(3)
A 		80
B 2
(-3)
A 		8.7
(-1.8)
A 		36.1
(3)
A 		35.8
(2.9)
A 		34
C 38.7
(-1.2)
A 		10.1
(-3)
A 		37.2
(-1.3)
A 		104.2
(3)
A 		94
avr 14.9
(-3) 		29.3
(-1.6) 		27.5
(-1.7) 		74.7
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 4.9
(-3)
A 		12.7
(-1.6)
A 		5.4
(-2.9)
A 		13.1
(-1.5)
A 		37.2
(3)
A 		11.1
(-1.8)
A 		32
B 18.5
(-1.1)
A 		29.2
(0.8)
A 		41.2
(2.9)
A 		42
(3)
A 		29.6
(0.8)
A 		7.4
(-3)
A 		35
C 43.4
(1.7)
A 		53.7
(3)
A 		32.1
(0.3)
A 		5.6
(-3)
A 		24.3
(-0.7)
A 		28.7
(-0.1)
A 		48
avr 22.3
(-0.6) 		31.9
(3) 		26.2
(0.9) 		20.2
(-1.3) 		30.4
(2.4) 		15.7
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.5
(-3)
A 		15
(3)
A 		2.4
(-2.6)
A 		12.3
(1.8)
A 		14
B 0.6
(-3)
A 		2.2
(-1.8)
A 		8.4
(3)
A 		7.6
(2.4)
A 		8
C 12.8
(1)
A 		2.9
(-3)
A 		13
(1.1)
A 		17.6
(3)
A 		15
avr 5
(-3) 		6.7
(-1.6) 		7.9
(-0.7) 		12.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.9
(-3)
A 		4.5
(-0.9)
A 		1.2
(-2.8)
A 		3.3
(-1.6)
A 		11.2
(3)
A 		2.7
(-2)
A 		10
B 6.4
(-0.6)
A 		9.7
(1.5)
A 		10
(1.7)
A 		11.1
(2.4)
A 		12
(3)
A 		2.7
(-3)
A 		9
C 16.1
(2.9)
A 		16.4
(3)
A 		8.2
(-0.2)
A 		1.1
(-3)
A 		7.9
(-0.3)
A 		9.6
(0.3)
A 		15
avr 7.8
(0.1) 		10.2
(2.8) 		6.5
(-1.3) 		5.2
(-2.8) 		10.4
(3) 		5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15545
Sequence Type Exemplar sequence
Representative Public ID R09B5.1 NCBI
Target Description R09B5.1 /REP_DB=WormBase Gene ID /WP=CE12618 /TR=O44617 /GB=AAB94210.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071011 NCBI Caenorhabditis elegans R09B5.1 (R09B5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000025917 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1434170:1438967:-1 11/11 None
R09B5.1 ENSEMBL cdna:known chromosome:CEL140:V:1434170:1436878:-1 gene:R09B5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025900 4/11 Cross Hyb Matching Probes None
SNAP00000025901 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1434169-1436100(-) 67.9 80.61
Public Domain and Genome References
Gene Title
Ensembl R09B5.1
Entrez Gene 187725 Entrez gene
SwissProt O44617 EMBL-EBI
WormBase CE12618 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503412 R09B5.1 [Caenorhabditis elegans] gb|AAB94210.1| Hypothetical protein R09B5.1 [Caenorhabditis elegans] 0.0
blast NP_503412 R09B5.1 [Caenorhabditis elegans] gb|AAB94210.1| Hypothetical protein R09B5.1 [Caenorhabditis elegans] 1.0E-156
blast AAD14745 Hypothetical protein Y38A10A.4 [Caenorhabditis elegans] ref|NP_504572.1| Y38A10A.4 [Caenorhabditis elegans] 2.0E-52
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 1.0E-14
blast CAA20949 Hypothetical protein Y102A5C.19 [Caenorhabditis elegans] ref|NP_507290.1| Y102A5C.19 [Caenorhabditis elegans] 1.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.3E-22
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-7
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.9E-31
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-7
Sequence
Target Sequence 
>C. ELEGANS:183317_AT
aggttgctaaaatctcgttcgttggattcaggggatataaaattgcaacgattttgcaat
ctttctcaccaggaaccctgacacgactttatgtcaatgttgctgattcggatatctctc
aaatcatcgacgcggagcattggatttatctaaaaaagatcagagtgctttcgccttctc
cggtttccattccgattgatgctattcttcacatgacacacttcgacgtttctgtgatcc
acctttccactgatgatgtcgcaaagatcaaaaatgtgaaagttcatttggatgacgatt
ggcatgaggaggagctcgtgggggctgtgggggcggaggaggaggaggacgaggaggacg
aggaagaggaggacgaggacgaggaagaggggatggctgatgtcccggaagtcaatgagg
ccgtgcacagagtcaacattaaactcggcgacgctgacatcaccgttgtggtgtctccga
catact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTTGCTAAAATCTCGTTCGTTGG 374 55 872 Antisense
TTTTGCAATCTTTCTCACCAGGAAC 696 677 923 Antisense
CAGGAACCCTGACACGACTTTATGT 79 207 941 Antisense
AAAGATCAGAGTGCTTTCGCCTTCT 103 123 1026 Antisense
TTCTCCGGTTTCCATTCCGATTGAT 620 693 1047 Antisense
TCACATGACACACTTCGACGTTTCT 336 627 1080 Antisense
CACCTTTCCACTGATGATGTCGCAA 142 201 1111 Antisense
GGATGGCTGATGTCCCGGAAGTCAA 572 513 1262 Antisense
ATGAGGCCGTGCACAGAGTCAACAT 274 45 1286 Antisense
TAAACTCGGCGACGCTGACATCACC 335 641 1311 Antisense
ACCGTTGTGGTGTCTCCGACATACT 344 89 1333 Antisense
Sequence Source Affymetrix Proprietary Database