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[183314_at]

Description C29F5.1 /REP_DB=WormBase Gene ID /WP=CE02508 /TR=Q18310 /GB=AAC46820.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 61      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 44      6grp_total > 72      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1778
1 2 3 4 range
A 594.5
(-3)
P 		1759.2
(1.9)
P 		2017.3
(3)
P 		850.9
(-1.9)
P 		1423
B 620.1
(-3)
P 		2182.9
(2.5)
P 		2320.7
(3)
P 		838.5
(-2.2)
P 		1701
C 604.9
(-3)
P 		2372.2
(3)
P 		2066.6
(2)
P 		963.7
(-1.8)
P 		1767
avr 606.5
(-3) 		2104.8
(2.9) 		2134.9
(3) 		884.4
(-1.9) 		1528

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1278
1 2 3 4 5 6 range
A 1431.6
(-0.1)
P 		1892.4
(2.4)
P 		1948.1
(2.7)
P 		2005.5
(3)
P 		1884.7
(2.3)
P 		907.4
(-3)
P 		1098
B 1144.3
(-2)
P 		1636.8
(0.5)
P 		1832.1
(1.5)
P 		2115.2
(3)
P 		1713.5
(0.9)
P 		951.1
(-3)
P 		1164
C 1126.9
(-1.6)
P 		1721.1
(1.2)
P 		2113.2
(3)
P 		1894.4
(2)
P 		1492
(0.1)
P 		837.2
(-3)
P 		1276
avr 1234.3
(-1.2) 		1750.1
(1.6) 		1964.5
(2.8) 		2005
(3) 		1696.7
(1.3) 		898.6
(-3) 		1106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 596
1 2 3 4 range
A 216.4
(-1.6)
P 		381.9
(0.8)
P 		527.4
(3)
P 		124.6
(-3)
P 		403
B 197.7
(-2.7)
P 		539.1
(3)
P 		537.8
(3)
P 		178.7
(-3)
P 		360
C 200.2
(-2.6)
P 		682
(2.6)
P 		720.3
(3)
P 		162.5
(-3)
P 		558
avr 204.8
(-2.3) 		534.3
(2.2) 		595.2
(3) 		155.3
(-3) 		440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 263.9
(-2.4)
P 		673
(3)
P 		424.3
(-0.3)
P 		508.7
(0.8)
P 		568.7
(1.6)
P 		220.9
(-3)
P 		452
B 398.1
(-2.2)
P 		544.8
(0.3)
P 		444.9
(-1.4)
P 		560.2
(0.6)
P 		696.2
(3)
P 		354.7
(-3)
P 		342
C 417.7
(0.2)
P 		525.2
(2.7)
P 		537.8
(3)
P 		381
(-0.7)
P 		482.8
(1.7)
P 		280.3
(-3)
P 		258
avr 359.9
(-1.5) 		581
(3) 		469
(0.7) 		483.3
(1) 		582.6
(3) 		285.3
(-3) 		297
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5151
Sequence Type Exemplar sequence
Representative Public ID C29F5.1 NCBI
Target Description C29F5.1 /REP_DB=WormBase Gene ID /WP=CE02508 /TR=Q18310 /GB=AAC46820.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062866 NCBI Caenorhabditis elegans C29F5.1 (C29F5.1) mRNA, complete cds. 11/11 None
SNAP00000032523 ENSEMBL cdna:SNAP chromosome:CEL140:II:6303503:6306157:1 11/11 None
GENEFINDER00000032529 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6303503:6308021:1 11/11 None
C29F5.1 ENSEMBL cdna:known chromosome:CEL140:II:6303460:6306169:1 gene:C29F5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6303499-6306154(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29F5.1
Entrez Gene 174041 Entrez gene
SwissProt Q18310 EMBL-EBI
WormBase CE02508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495267 C29F5.1 [Caenorhabditis elegans] gb|AAC46820.1| Hypothetical protein C29F5.1 [Caenorhabditis elegans] 0.0
blast CAE59287 Hypothetical protein CBG02620 [Caenorhabditis briggsae] 0.0
blast AAZ32812 Hypothetical protein C29F5.8 [Caenorhabditis elegans] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:183314_AT
tcattcaacgggtccattcttccaacttgtttcatatcaatatgggcaattccgaattct
tgttagatatgaagttgactgtgctgattatgcagctgtcaaagccactccagtcccagt
agataaatctgaagttctgccagagaaaaagaaaagtgatatgaacccggatattgaagt
agtgaattatggagaagtaccacatgatgttccacttcaagtactcacaacatacccaca
aggagctggattcccatttttcacgtgggctcagttgttcttcactaatgctaaccatga
gcttcttggttggttcaaaggaaacggagatttcggaaagccagctatttacactttgca
agatgtctctaaaatgatgaagccccttccgttggtctctttgtgcaaagttcacgactg
tcttgacaaagtttacaaattcttgactaagaacgatgacaatttccgatgtggacttgt
gtggaaaggaaaagctcatctggaaatcttcgcgaaacacgaagaagcaactggtggaat
cagtaagggagtccgtgatttcttggctacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTCAACGGGTCCATTCTTCCAA 441 617 558 Antisense
TATGCAGCTGTCAAAGCCACTCCAG 240 657 646 Antisense
GCCACTCCAGTCCCAGTAGATAAAT 373 279 661 Antisense
AGTACCACATGATGTTCCACTTCAA 341 61 753 Antisense
GATTCCCATTTTTCACGTGGGCTCA 682 429 806 Antisense
GGCTCAGTTGTTCTTCACTAATGCT 286 537 825 Antisense
AAATGATGAAGCCCCTTCCGTTGGT 283 119 929 Antisense
TTCCGTTGGTCTCTTTGTGCAAAGT 502 695 944 Antisense
GTGCAAAGTTCACGACTGTCTTGAC 71 481 960 Antisense
AAGCTCATCTGGAAATCTTCGCGAA 252 151 1049 Antisense
GGAGTCCGTGATTTCTTGGCTACAC 422 517 1105 Antisense
Sequence Source Affymetrix Proprietary Database