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[183313_at]

Description K02B2.6 /REP_DB=WormBase Gene ID /WP=CE04692 /TR=Q21124 /GB=AAK39247.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 9.4
(-3)
A 		70.5
(3)
A 		13.9
(-2.6)
A 		34.2
(-0.6)
A 		61
B 12
(1.8)
A 		13.2
(3)
A 		7
(-3)
A 		11
(0.9)
A 		6
C 4.6
(-3)
A 		4.4
(-3)
A 		9
(-2)
A 		31.6
(3)
A 		27
avr 8.7
(-3) 		29.4
(3) 		10
(-2.6) 		25.6
(1.9) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 14.3
(-0.3)
A 		5.9
(-2.9)
A 		25.2
(3)
A 		5.6
(-3)
A 		8
(-2.3)
A 		18.4
(0.9)
A 		20
B 10.4
(-1.2)
A 		19.1
(1.3)
A 		24.7
(3)
A 		8.4
(-1.8)
A 		4.4
(-3)
A 		14.6
(0)
A 		20
C 31.1
(3)
A 		31
(3)
A 		12
(-1.1)
A 		7.4
(-2.1)
A 		3.3
(-3)
A 		22.5
(1.1)
A 		28
avr 18.6
(2.2) 		18.7
(2.3) 		20.6
(3) 		7.1
(-2.3) 		5.2
(-3) 		18.5
(2.2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.4
(-3)
A 		15.3
(3)
A 		3.6
(-2.9)
A 		5
(-2.2)
A 		12
B 3.8
(3)
A 		3.3
(1.6)
A 		1.6
(-3)
A 		2.3
(-1.1)
A 		2
C 1.5
(-2.7)
A 		1.3
(-3)
A 		3.1
(-0.3)
A 		5.3
(3)
A 		4
avr 2.9
(-2.8) 		6.6
(3) 		2.8
(-3) 		4.2
(-0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.6
(-1.2)
A 		2.1
(-2)
A 		5.5
(3)
A 		1.4
(-3)
A 		2.4
(-1.5)
A 		4.5
(1.5)
A 		4
B 3.6
(-0.7)
A 		6.4
(3)
A 		6
(2.5)
A 		2.2
(-2.5)
A 		1.8
(-3)
A 		5.4
(1.7)
A 		5
C 11.5
(3)
A 		9.5
(1.8)
A 		3
(-1.9)
A 		1.5
(-2.8)
A 		1.1
(-3)
A 		7.5
(0.7)
A 		10
avr 5.9
(2.9) 		6
(3) 		4.8
(1.3) 		1.7
(-3) 		1.8
(-2.9) 		5.8
(2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183313_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10700
Sequence Type Exemplar sequence
Representative Public ID K02B2.6 NCBI
Target Description K02B2.6 /REP_DB=WormBase Gene ID /WP=CE04692 /TR=Q21124 /GB=AAK39247.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068495(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068495 NCBI Caenorhabditis elegans K02B2.6 (K02B2.6) mRNA, complete cds. 11/11 None
SNAP00000017503 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5961674:5962253:-1 10/11 None
GENEFINDER00000017508 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5961674:5962280:-1 10/11 None
K02B2.6 ENSEMBL cdna:known chromosome:CEL140:IV:5961674:5962253:-1 gene:K02B2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5961679-5962259(-) 97.45 100.0
Public Domain and Genome References
Gene Title
Ensembl K02B2.6
Entrez Gene 186865 Entrez gene
SwissProt Q21124 EMBL-EBI
WormBase CE04692 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39247 Hypothetical protein K02B2.6 [Caenorhabditis elegans] ref|NP_500896.1| K02B2.6 [Caenorhabditis elegans] 1.0E-67
blast AAK39247 Hypothetical protein K02B2.6 [Caenorhabditis elegans] ref|NP_500896.1| K02B2.6 [Caenorhabditis elegans] 8.0E-56
blast AAK39247 Hypothetical protein K02B2.6 [Caenorhabditis elegans] ref|NP_500896.1| K02B2.6 [Caenorhabditis elegans] 9.0E-56
blast AAB66196 Hypothetical protein K09F6.6 [Caenorhabditis elegans] ref|NP_494225.2| K09F6.6 [Caenorhabditis elegans] 2.0E-10
blast AAB66196 Hypothetical protein K09F6.6 [Caenorhabditis elegans] ref|NP_494225.2| K09F6.6 [Caenorhabditis elegans] 1.0E-9
blast AAB66196 Hypothetical protein K09F6.6 [Caenorhabditis elegans] ref|NP_494225.2| K09F6.6 [Caenorhabditis elegans] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:183313_AT
tattccagacaagcttcttcctgctccgatccctccaccttggtacgatggaatggacgc
tctttatttgttctgggaagggatctcccgcgatgtcgttagagcaattcttggagttaa
agacaaaatcaatatcaaaaccacacaggtggaaagaacacgatgtgccaacgcgttgaa
gagctcttcgatgcctagaggaacgtccacaatgagttttttggatcccatccagctgaa
aaaccgttcaggaagagaagtacaagaggttggtgaagtttttttgttgagaatgaccaa
tattgaaattattatagcaaaccgattcgccaggagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCCAGACAAGCTTCTTCCTGCT 433 665 51 Antisense
ATCCCTCCACCTTGGTACGATGGAA 246 37 79 Antisense
AATGGACGCTCTTTATTTGTTCTGG 177 163 102 Antisense
TGTTCTGGGAAGGGATCTCCCGCGA 33 563 119 Antisense
ATCTCCCGCGATGTCGTTAGAGCAA 164 31 133 Antisense
TGCCAACGCGTTGAAGAGCTCTTCG 188 587 216 Antisense
GAAGAGCTCTTCGATGCCTAGAGGA 325 339 228 Antisense
GATGCCTAGAGGAACGTCCACAATG 615 413 240 Antisense
CAATGAGTTTTTTGGATCCCATCCA 179 181 260 Antisense
ATCCCATCCAGCTGAAAAACCGTTC 361 1 275 Antisense
ATAGCAAACCGATTCGCCAGGAGAA 527 21 364 Antisense
Sequence Source Affymetrix Proprietary Database