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[183312_at] 7TM chemoreceptor, srsx family

Description C13D9.6 /REP_DB=WormBase Gene ID /WP=CE08139 /TR=O16240 /GB=AAB65310.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 08      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 15.1
(-3)
A 		15
(-3)
A 		53.2
(-0.9)
A 		124.2
(3)
P 		109
B 20.2
(-0.2)
A 		6.8
(-3)
A 		34.4
(2.8)
A 		35.3
(3)
A 		29
C 33
(-2.9)
A 		54.6
(-1.6)
A 		31.7
(-3)
A 		127.7
(3)
P 		96
avr 22.8
(-3) 		25.5
(-2.8) 		39.8
(-1.6) 		95.7
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 37.2
(1.3)
A 		15.5
(-1.4)
A 		51
(3)
A 		2.6
(-3)
A 		40.9
(1.7)
A 		10
(-2.1)
A 		48
B 10.1
(-2.4)
A 		31
(0.3)
A 		52.6
(3)
A 		5.1
(-3)
A 		26.5
(-0.3)
A 		11
(-2.3)
A 		48
C 19
(-1.2)
A 		5.5
(-3)
A 		13.7
(-1.9)
A 		50.4
(3)
A 		7.6
(-2.7)
A 		7.7
(-2.7)
A 		45
avr 22.1
(-0.5) 		17.3
(-1.4) 		39.1
(3) 		19.4
(-1) 		25
(0.1) 		9.6
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 5.5
(-2.1)
A 		3.3
(-3)
A 		13.9
(1.3)
A 		18.2
(3)
P 		15
B 6.4
(1.5)
A 		1.7
(-3)
A 		8
(3)
A 		7.5
(2.5)
A 		6
C 10.9
(-3)
A 		15.7
(-0.3)
A 		11
(-2.9)
A 		21.5
(3)
P 		11
avr 7.6
(-2.5) 		6.9
(-3) 		11
(-0.2) 		15.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.9
(0.2)
A 		5.5
(-0.5)
A 		11.1
(2.4)
A 		0.7
(-3)
A 		12.3
(3)
A 		2.4
(-2.1)
A 		12
B 3.5
(-1.9)
A 		10.3
(1.7)
A 		12.8
(3)
A 		1.4
(-3)
A 		10.8
(1.9)
A 		4.1
(-1.6)
A 		11
C 7
(0.8)
A 		1.7
(-3)
A 		3.5
(-1.7)
A 		10.1
(3)
A 		2.5
(-2.4)
A 		2.6
(-2.4)
A 		8
avr 5.8
(-0.2) 		5.8
(-0.2) 		9.1
(3) 		4.1
(-1.9) 		8.5
(2.4) 		3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183312_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15089
Sequence Type Exemplar sequence
Representative Public ID C13D9.6 NCBI
Target Description C13D9.6 /REP_DB=WormBase Gene ID /WP=CE08139 /TR=O16240 /GB=AAB65310.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071939 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-13) (srsx-13) mRNA, complete cds. 11/11 None
GENEFINDER00000031116 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4981623:4986970:-1 11/11 None
C13D9.6 ENSEMBL cdna:known chromosome:CEL140:V:4981623:4983005:-1 gene:C13D9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4981622-4983005(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-13
Ensembl C13D9.6
Entrez Gene 182574 Entrez gene
SwissProt O16240 EMBL-EBI
WormBase CE08139 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65308 Na/ca exchangers protein 8 [Caenorhabditis elegans] ref|NP_504341.1| Na/Ca eXchangers family member (ncx-8) [Caenorhabditis elegans] 0.0
blast CAE64039 Hypothetical protein CBG08637 [Caenorhabditis briggsae] 0.0
blast AAB65309 Na/ca exchangers protein 9 [Caenorhabditis elegans] ref|NP_504342.1| Na/Ca eXchangers family member (ncx-9) [Caenorhabditis elegans] 0.0
blast AAB65310 Serpentine receptor, class sx protein 13 [Caenorhabditis elegans] ref|NP_504340.1| Serpentine Receptor, class SX family member (srsx-13) [Caenorhabditis elegans] 1.0E-141
blast AAB65306 Serpentine receptor, class sx protein 12 [Caenorhabditis elegans] ref|NP_504339.1| Serpentine Receptor, class SX family member (srsx-12) [Caenorhabditis elegans] 1.0E-78
blast CAE64038 Hypothetical protein CBG08636 [Caenorhabditis briggsae] 4.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR004837 EMBL-EBI Sodium/calcium exchanger membrane region 1.7E-28
Pfam IPR004837 EMBL-EBI Sodium/calcium exchanger membrane region 2.4E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504340.1 8 12-34,49-71,84-106,121-143,148-165,169-188,208-229,239-261
C13D9.6 8 12-34,49-71,84-106,121-143,148-165,169-188,208-229,239-261
GENEFINDER00000031116 17 4-26,107-129,181-203,210-232,242-264,488-507,517-539,552-574,616-638,731-753,768-790,803-825,840-862,867-884,888-907,927-948,958-980
Sequence
Target Sequence 
>C. ELEGANS:183312_AT
ttttatgtctattcgcaagctgctcaaggcgtgctgatgttaataattatgctggacttg
ttgatattaatcaaattcccactacaatacatgaacattgctagtcggaaataccttttt
gtaagttttatgcttgttattttatattcatcaagtgtcactctatttggatatctcaca
acaaatgatgataccatccatgtttgcaatccagtttttgcactgaacaccacagccagt
ttgatttcaaaaagtttaatattgttcatgagctcaattaccttattcgtgtacataatt
ataataatattgtataaaaagaaaaaagatggacgaaatgatgattcttcaaaaattctg
aaccgtctgaaagttttggttgtcatctatatttttacatggtttgtcaatcaaatcttt
gcaattttattcctgcacgataatggaactgtaaaatgggagaagatgttgttcacacac
aatgcatttttcatagttttgtcaaacagcaacacattttacgtgacaatgtggaaaagc
gaagaataccgaaaacattttcgttcactatggggacttaacaagcgtttcgatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTATGTCTATTCGCAAGCTGCTC 416 675 262 Antisense
CAAGCTGCTCAAGGCGTGCTGATGT 546 185 277 Antisense
ATCAAATTCCCACTACAATACATGA 318 25 331 Antisense
TGCTAGTCGGAAATACCTTTTTGTA 56 561 360 Antisense
AGTGTCACTCTATTTGGATATCTCA 645 59 415 Antisense
ATACCATCCATGTTTGCAATCCAGT 452 23 452 Antisense
GTTTTTGCACTGAACACCACAGCCA 553 449 475 Antisense
ACACCACAGCCAGTTTGATTTCAAA 631 109 488 Antisense
CATGAGCTCAATTACCTTATTCGTG 65 209 528 Antisense
ACATTTTCGTTCACTATGGGGACTT 536 103 816 Antisense
GGGGACTTAACAAGCGTTTCGATGT 41 495 833 Antisense
Sequence Source Affymetrix Proprietary Database