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[183311_at]

Description F40H3.1 /REP_DB=WormBase Gene ID /WP=CE19862 /TR=Q9TZK2 /GB=AAC67429.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 78      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 95      6grp_total > 59      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1462
1 2 3 4 range
A 764.4
(-1.4)
P 		413.3
(-2.9)
P 		401.6
(-3)
P 		1782.5
(3)
P 		1381
B 716.9
(-1.4)
P 		487.6
(-2.4)
P 		330.2
(-3)
P 		1792.3
(3)
P 		1462
C 766.5
(-1)
P 		430.1
(-2.8)
P 		397
(-3)
P 		1531.9
(3)
P 		1135
avr 749.3
(-1.3) 		443.7
(-2.7) 		376.3
(-3) 		1702.2
(3) 		1326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 826
1 2 3 4 5 6 range
A 650.5
(-0.5)
P 		462
(-3)
P 		486.2
(-2.7)
P 		512.7
(-2.3)
P 		667.1
(-0.3)
P 		912.5
(3)
P 		451
B 778.3
(-0.2)
P 		615.3
(-2.1)
P 		542.1
(-3)
P 		618.8
(-2.1)
P 		755.1
(-0.5)
P 		1044.7
(3)
P 		503
C 810.5
(-0.3)
P 		593.4
(-1.9)
P 		442.1
(-3)
P 		609.8
(-1.8)
P 		578.4
(-2)
P 		1267.9
(3)
P 		826
avr 746.4
(-0.4) 		556.9
(-2.3) 		490.1
(-3) 		580.4
(-2.1) 		666.9
(-1.2) 		1075
(3) 		585
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 278.3
(3)
P 		89.7
(-3)
P 		105
(-2.5)
P 		260.9
(2.4)
P 		189
B 228.6
(-0)
P 		120.4
(-2.1)
P 		76.5
(-3)
P 		381.9
(3)
P 		305
C 253.7
(2.8)
P 		123.7
(-3)
P 		138.4
(-2.3)
P 		258.3
(3)
P 		135
avr 253.5
(1.5) 		111.3
(-2.9) 		106.6
(-3) 		300.4
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 119.9
(-2.3)
P 		164.3
(0)
P 		105.9
(-3)
P 		130
(-1.8)
P 		201.3
(1.9)
P 		222.2
(3)
P 		116
B 270.8
(0.2)
P 		204.8
(-1.3)
P 		131.6
(-3)
P 		163.9
(-2.2)
P 		306.8
(1.1)
P 		389.6
(3)
P 		258
C 300.4
(0.6)
P 		181.1
(-1.7)
P 		112.5
(-3)
P 		122.6
(-2.8)
P 		187.1
(-1.6)
P 		424.5
(3)
P 		312
avr 230.4
(-0) 		183.4
(-1.3) 		116.7
(-3) 		138.8
(-2.4) 		231.7
(0) 		345.4
(3) 		229
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183311_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4594
Sequence Type Exemplar sequence
Representative Public ID F40H3.1 NCBI
Target Description F40H3.1 /REP_DB=WormBase Gene ID /WP=CE19862 /TR=Q9TZK2 /GB=AAC67429.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062832(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062832 NCBI Caenorhabditis elegans F40H3.1 (F40H3.1) mRNA, complete cds. 11/11 None
SNAP00000001570 ENSEMBL cdna:SNAP chromosome:CEL140:II:6183001:6184301:1 11/11 None
GENEFINDER00000001576 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6183046:6184301:1 11/11 None
F40H3.1 ENSEMBL cdna:known chromosome:CEL140:II:6179908:6184301:1 gene:F40H3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6179904-6184298(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40H3.1
Entrez Gene 185570 Entrez gene
SwissProt Q9TZK2 EMBL-EBI
WormBase CE19862 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67429 Hypothetical protein F40H3.1 [Caenorhabditis elegans] ref|NP_495233.1| F40H3.1 [Caenorhabditis elegans] 0.0
blast CAE59258 Hypothetical protein CBG02586 [Caenorhabditis briggsae] 0.0
blast AAC67429 Hypothetical protein F40H3.1 [Caenorhabditis elegans] ref|NP_495233.1| F40H3.1 [Caenorhabditis elegans] 1.0E-153
blast AAC67429 Hypothetical protein F40H3.1 [Caenorhabditis elegans] ref|NP_495233.1| F40H3.1 [Caenorhabditis elegans] 1.0E-149
blast CAE59258 Hypothetical protein CBG02586 [Caenorhabditis briggsae] 1.0E-144
blast CAE59258 Hypothetical protein CBG02586 [Caenorhabditis briggsae] 1.0E-142
Sequence
Target Sequence 
>C. ELEGANS:183311_AT
gcaattttgctcttgtgcttcgtctatccaacaaatatcaagtagatccggtcatcgacg
cttgccaaaattttatcattcgtcagcatttggacgtgcttcgagcggacgagattctca
cgatgttgattgctgcattcgagcaccattgcaagagagaagttgtacagaaactgatta
aaagacttgcttcggaaggaaatagcgttttcactaagcttaagatctctcgatatttgc
ctgctcaagtttatggttcagtcatatcgacatcaatgaatttgaaccaagcaaaagagc
acgagctgatgaatggacatgttcttaaaatggaaagatcaaaaatccgttggcgtcaat
cagtctgcgaagaatgcaagagtgttgccgaatgtgcaaattgcgaggaatgcaaaaaga
cagtgtgccgaaatcacgtcagcaagcttaaatgttccagtgactatggagcgaaactcg
ctgctgatttgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATTTTGCTCTTGTGCTTCGTCT 434 323 977 Antisense
GTGCTTCGTCTATCCAACAAATATC 406 479 991 Antisense
CAAGTAGATCCGGTCATCGACGCTT 214 183 1015 Antisense
TTGGACGTGCTTCGAGCGGACGAGA 102 709 1066 Antisense
GATTCTCACGATGTTGATTGCTGCA 638 431 1089 Antisense
GATTGCTGCATTCGAGCACCATTGC 592 433 1104 Antisense
TAAGATCTCTCGATATTTGCCTGCT 629 637 1197 Antisense
TTTGCCTGCTCAAGTTTATGGTTCA 385 669 1212 Antisense
CGTTGGCGTCAATCAGTCTGCGAAG 619 247 1324 Antisense
GACAGTGTGCCGAAATCACGTCAGC 708 367 1395 Antisense
AGCGAAACTCGCTGCTGATTTGAAG 125 83 1446 Antisense
Sequence Source Affymetrix Proprietary Database