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[183310_s_at]

Description T23C6.3 /REP_DB=WormBase Gene ID /WP=CE07528 /TR=O02039 /GB=AAB52884.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 93      6grp_total > 67      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 733
1 2 3 4 range
A 233.7
(-2.5)
P 		169.3
(-3)
P 		220.6
(-2.6)
P 		884.6
(3)
P 		715
B 208.2
(-2.4)
P 		169.4
(-2.9)
P 		160
(-3)
P 		685.7
(3)
P 		526
C 210.8
(-2.3)
P 		151.6
(-3)
P 		234
(-2)
P 		626
(3)
P 		474
avr 217.6
(-2.4) 		163.4
(-3) 		204.9
(-2.6) 		732.1
(3) 		569

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 685
1 2 3 4 5 6 range
A 296.6
(-2.1)
P 		360.3
(-1.5)
P 		195.6
(-3)
P 		283.7
(-2.2)
P 		220.8
(-2.8)
P 		844
(3)
P 		648
B 266.2
(-1.8)
P 		217.4
(-2.3)
P 		159.2
(-3)
P 		219.1
(-2.3)
P 		249.2
(-2)
P 		688.8
(3)
P 		530
C 304.9
(-2.5)
P 		277.9
(-3)
P 		306
(-2.5)
P 		353.9
(-1.6)
P 		281.5
(-2.9)
P 		600.8
(3)
P 		323
avr 289.2
(-2.2) 		285.2
(-2.2) 		220.3
(-3) 		285.6
(-2.2) 		250.5
(-2.6) 		711.2
(3) 		491
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 85.1
(0.1)
P 		36.7
(-3)
P 		57.7
(-1.6)
P 		129.5
(3)
P 		93
B 66.4
(-1.4)
P 		41.8
(-2.7)
P 		37.1
(-3)
P 		146.1
(3)
P 		109
C 69.8
(-0.5)
P 		43.6
(-3)
P 		81.5
(0.7)
P 		105.6
(3)
P 		62
avr 73.8
(-0.7) 		40.7
(-3) 		58.8
(-1.7) 		127.1
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 54.7
(-2.6)
P 		128.1
(0.1)
P 		42.6
(-3)
P 		72
(-1.9)
P 		66.6
(-2.1)
P 		205.5
(3)
P 		163
B 92.6
(-1.5)
P 		72.4
(-2.1)
P 		38.7
(-3)
P 		58
(-2.5)
P 		101.3
(-1.3)
P 		256.9
(3)
P 		218
C 113
(-1.1)
P 		84.8
(-2.4)
P 		77.9
(-2.7)
P 		71.2
(-3)
P 		91.1
(-2.1)
P 		201.1
(3)
P 		130
avr 86.8
(-1.8) 		95.1
(-1.5) 		53.1
(-3) 		67.1
(-2.5) 		86.3
(-1.8) 		221.2
(3) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183310_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17398
Sequence Type Exemplar sequence
Representative Public ID T23C6.3 NCBI
Target Description T23C6.3 /REP_DB=WormBase Gene ID /WP=CE07528 /TR=O02039 /GB=AAB52884.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078375(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078375 NCBI Caenorhabditis elegans T23C6.3 (T23C6.3) mRNA, complete cds. 11/11 None
SNAP00000033353 ENSEMBL cdna:SNAP chromosome:CEL140:X:17136196:17138019:-1 11/11 None
GENEFINDER00000033361 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17136196:17138019:-1 11/11 None
T23C6.3.1 ENSEMBL cdna:known chromosome:CEL140:X:17135863:17138024:-1 gene:T23C6.3 11/11 None
T23C6.3.2 ENSEMBL cdna:known chromosome:CEL140:X:17135923:17138022:-1 gene:T23C6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17136195-17138019(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23C6.3
Entrez Gene 181752 Entrez gene
SwissProt O02039 EMBL-EBI
WormBase CE07528 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52884 Hypothetical protein T23C6.3 [Caenorhabditis elegans] ref|NP_510776.1| T23C6.3 [Caenorhabditis elegans] 0.0
blast AAA82378 Hypothetical protein K09E3.7 [Caenorhabditis elegans] ref|NP_510775.1| K09E3.7 [Caenorhabditis elegans] 1.0E-125
Sequence
Target Sequence 
>C. ELEGANS:183310_S_AT
agaagttccatcgtcatctaccttcttatctaacaacgaaacaacaatcgcaagtgacat
ggatatgtcgattgatcgaccgcaaagtatggacatgtcgcaaacgctttctccagagca
aacgctttctcctagagagaagcttcaagtgcaagatagaaagatctcaacgactcaaga
aactcctccggcgctgccatcaccatccggaacactcacactcccaacagttccagcttc
gacattaaaacgtaaagaatttggtgacttgttggcctgtccaaccggcaaacgtgtaac
tattgatgaacccaatcgagcagagcgcactgagacaattatgccatctagacaaatgat
gtacccaatggtgaattaccaagcacttccaatgccaccacaatcaattccatcaatgat
tcccccattcatccctacgattccttcgacgagcacaatgcctccaatgatgccgtatcc
aaatgttctactcactgctgctccgggagacgttgccccaatcgattcactcaccccatc
atttttgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGTTCCATCGTCATCTACCTTC 280 75 999 Antisense
TGGACATGTCGCAAACGCTTTCTCC 472 547 1088 Antisense
TCTCCAGAGCAAACGCTTTCTCCTA 182 611 1108 Antisense
CAACAGTTCCAGCTTCGACATTAAA 410 189 1223 Antisense
ATTTGGTGACTTGTTGGCCTGTCCA 663 17 1257 Antisense
TGAACCCAATCGAGCAGAGCGCACT 20 575 1305 Antisense
AATTACCAAGCACTTCCAATGCCAC 368 175 1372 Antisense
AATGCCACCACAATCAATTCCATCA 64 167 1389 Antisense
GATTCCTTCGACGAGCACAATGCCT 389 433 1437 Antisense
TATCCAAATGTTCTACTCACTGCTG 225 657 1474 Antisense
TTCACTCACCCCATCATTTTTGAGA 493 687 1524 Antisense
Sequence Source Affymetrix Proprietary Database