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[183309_at]

Description K03H6.2 /REP_DB=WormBase Gene ID /WP=CE18012 /TR=O61218 /GB=AAC04418.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      4grp_high_8_8 > 51      6grp_highest_nonorm > 25      6grp_total > 52      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2726
1 2 3 4 range
A 2795.4
(3)
P 		2281.4
(1.8)
P 		2418.8
(2.2)
P 		119.1
(-3)
A 		2676
B 2563.1
(3)
P 		2566.6
(3)
P 		2059.7
(1.8)
P 		69.2
(-3)
P 		2497
C 2538.2
(3)
P 		1899.6
(1.4)
P 		2373.6
(2.6)
P 		74.8
(-3)
A 		2463
avr 2632.2
(3) 		2249.2
(2.1) 		2284
(2.2) 		87.7
(-3) 		2545

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7989
1 2 3 4 5 6 range
A 2403.2
(-1.6)
P 		4109.2
(-0.1)
P 		7640.5
(3)
P 		5091.4
(0.8)
P 		2334.9
(-1.6)
P 		782.2
(-3)
P 		6858
B 3295.6
(-0.9)
P 		4226.9
(-0.1)
P 		7818.7
(3)
P 		4621.8
(0.3)
P 		2330.3
(-1.7)
P 		773.4
(-3)
P 		7045
C 2856.1
(-1.4)
P 		3021.2
(-1.2)
P 		8668.6
(3)
P 		4921.9
(0.2)
P 		2508.7
(-1.6)
P 		679.3
(-3)
P 		7989
avr 2851.6
(-1.3) 		3785.8
(-0.5) 		8042.6
(3) 		4878.4
(0.4) 		2391.3
(-1.6) 		745
(-3) 		7298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1005
1 2 3 4 range
A 1017.8
(3)
P 		495.2
(-0.1)
P 		632.3
(0.7)
P 		17.4
(-3)
A 		1000
B 817.3
(3)
P 		633.9
(1.6)
P 		477.3
(0.5)
P 		14.8
(-3)
P 		803
C 840.2
(3)
P 		546.1
(0.9)
P 		827.3
(2.9)
P 		12.6
(-3)
A 		828
avr 891.8
(3) 		558.4
(0.7) 		645.6
(1.3) 		14.9
(-3) 		877

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2016
1 2 3 4 5 6 range
A 443
(-2)
P 		1461.4
(2.2)
P 		1663.9
(3)
P 		1291.3
(1.5)
P 		704.6
(-0.9)
P 		190.4
(-3)
P 		1474
B 1146.7
(0.2)
P 		1407
(1.2)
P 		1898.6
(3)
P 		1224.2
(0.5)
P 		946.8
(-0.5)
P 		288.4
(-3)
P 		1610
C 1058.6
(-0.5)
P 		921.8
(-0.9)
P 		2206.3
(3)
P 		989.8
(-0.7)
P 		811.8
(-1.2)
P 		227.4
(-3)
P 		1979
avr 882.8
(-0.7) 		1263.4
(0.7) 		1922.9
(3) 		1168.4
(0.3) 		821.1
(-0.9) 		235.4
(-3) 		1688
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10986
Sequence Type Exemplar sequence
Representative Public ID K03H6.2 NCBI
Target Description K03H6.2 /REP_DB=WormBase Gene ID /WP=CE18012 /TR=O61218 /GB=AAC04418.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067689 NCBI Caenorhabditis elegans K03H6.2 (K03H6.2) mRNA, complete cds. 11/11 None
SNAP00000035082 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1511348:1515226:1 11/11 None
K03H6.2 ENSEMBL cdna:known chromosome:CEL140:IV:1512704:1515226:1 gene:K03H6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035089 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1512733-1515232(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H6.2
Entrez Gene 176959 Entrez gene
SwissProt O61218 EMBL-EBI
WormBase CE18012 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508643 T14G12.1 [Caenorhabditis elegans] gb|AAA82435.1| Hypothetical protein T14G12.1 [Caenorhabditis elegans] 0.0
blast NP_503046 C52D10.5 [Caenorhabditis elegans] gb|AAK77207.1| Hypothetical protein C52D10.5 [Caenorhabditis elegans] 0.0
blast T26169 hypothetical protein W04G5.1 - Caenorhabditis elegans 0.0
blast AAC04418 Hypothetical protein K03H6.2 [Caenorhabditis elegans] ref|NP_500090.1| K03H6.2 [Caenorhabditis elegans] 1.0E-151
blast CAE68221 Hypothetical protein CBG13892 [Caenorhabditis briggsae] 1.0E-136
blast CAE68222 Hypothetical protein CBG13893 [Caenorhabditis briggsae] 1.0E-120
Protein Domains
Database ID Description E-Value
scop a.4.1.Paired domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain 0.00600000005215406
Pfam IPR002921 EMBL-EBI Lipase, class 3 4.6E-59
Pfam IPR001523 EMBL-EBI Paired box protein, N-terminal 8.0E-6
Pfam IPR002921 EMBL-EBI Lipase, class 3 4.6E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500090.1 1 111-133
K03H6.2 1 111-133
Sequence
Target Sequence 
>C. ELEGANS:183309_AT
aaggcattcttcgacagtggatacattttcgagttcttctatgatgcgtacttggctctt
tggaagggaggattggaggctgagatgagaaatctgaagtacaggtatccagattatgaa
gtttgggtcaccggtcactccctgggagctgcgttggcctctgtcggagcatcttgggtt
gtcaaaaccggacttttcaagccagaacaaatgaaacttctgactgctggacagccaaga
accggagattacgcctactcgaactggcatcaaaatacgtttgcctactcattccgcatt
gtccatgctcacgatatggtgccacatttgccattccaatatgaattggtggatcacgac
aagatgtaccatcatagaactgagatttggtacaacaatgacatgtctattggctcaagc
taccacgtttgccaagaagccgatggtttctattgctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCATTCTTCGACAGTGGATACA 182 161 229 Antisense
ATTTTCGAGTTCTTCTATGATGCGT 302 15 253 Antisense
TATGATGCGTACTTGGCTCTTTGGA 355 653 268 Antisense
GAAACTTCTGACTGCTGGACAGCCA 180 357 441 Antisense
GATTACGCCTACTCGAACTGGCATC 239 429 475 Antisense
CAAAATACGTTTGCCTACTCATTCC 455 189 499 Antisense
GTCCATGCTCACGATATGGTGCCAC 543 477 529 Antisense
ATGGTGCCACATTTGCCATTCCAAT 404 51 544 Antisense
GTCTATTGGCTCAAGCTACCACGTT 447 469 633 Antisense
GCTACCACGTTTGCCAAGAAGCCGA 481 303 647 Antisense
GAAGCCGATGGTTTCTATTGCTCCA 702 343 664 Antisense
Sequence Source Affymetrix Proprietary Database