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[183308_at]

Description ZK180.2 /REP_DB=WormBase Gene ID /WP=CE07620 /TR=Q23443 /GB=AAB52966.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 34      4grp_high_8_8 > 25      6grp_total > 11      4grp_total > 38      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 136.9
(2.7)
P 		89
(-0.4)
P 		47.9
(-3)
A 		142.3
(3)
P 		94
B 160.6
(3)
P 		128.7
(0.9)
P 		108.1
(-0.5)
P 		70.9
(-3)
P 		90
C 210.3
(3)
P 		99.7
(-1.4)
P 		60
(-3)
P 		97.6
(-1.5)
P 		150
avr 169.3
(3) 		105.8
(-0.9) 		72
(-3) 		103.6
(-1.1) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 89
(-0.9)
P 		170
(3)
P 		145
(1.8)
P 		52.4
(-2.7)
M 		66.2
(-2.1)
P 		46.7
(-3)
A 		123
B 130.7
(0.8)
P 		177
(3)
P 		78.9
(-1.6)
P 		49.2
(-3)
P 		74.4
(-1.8)
P 		85.1
(-1.3)
P 		128
C 89.8
(-0.8)
P 		124.6
(3)
P 		116
(2.1)
P 		123.2
(2.8)
P 		77.2
(-2.2)
P 		70.1
(-3)
P 		55
avr 103.2
(-0.6) 		157.2
(3) 		113.3
(0.1) 		74.9
(-2.5) 		72.6
(-2.6) 		67.3
(-3) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 49.8
(3)
P 		19.3
(-1.9)
P 		12.5
(-3)
A 		20.8
(-1.7)
P 		37
B 51.2
(3)
P 		31.8
(-0.2)
P 		25.1
(-1.3)
P 		15.1
(-3)
P 		36
C 69.6
(3)
P 		28.7
(-1.6)
P 		20.9
(-2.5)
P 		16.5
(-3)
P 		53
avr 56.9
(3) 		26.6
(-1.6) 		19.5
(-2.7) 		17.5
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 16.4
(-2.4)
P 		60.5
(3)
P 		31.6
(-0.5)
P 		13.3
(-2.8)
M 		20
(-1.9)
P 		11.4
(-3)
A 		49
B 45.5
(1.2)
P 		58.9
(3)
P 		19.1
(-2.2)
P 		13
(-3)
P 		30.2
(-0.8)
P 		31.7
(-0.6)
P 		46
C 33.3
(1.1)
P 		38
(3)
P 		29.5
(-0.5)
P 		24.8
(-2.5)
P 		25
(-2.4)
P 		23.5
(-3)
P 		15
avr 31.7
(-0.5) 		52.5
(3) 		26.7
(-1.4) 		17
(-3) 		25.1
(-1.6) 		22.2
(-2.1) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183308_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10472
Sequence Type Exemplar sequence
Representative Public ID ZK180.2 NCBI
Target Description ZK180.2 /REP_DB=WormBase Gene ID /WP=CE07620 /TR=Q23443 /GB=AAB52966.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068179(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068179 NCBI Caenorhabditis elegans ZK180.2 (ZK180.2) mRNA, complete cds. 9/11 None
GENEFINDER00000005956 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4494638:4506602:-1 9/11 None
ZK180.2 ENSEMBL cdna:known chromosome:CEL140:IV:4502089:4505708:-1 gene:ZK180.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018370 1/11 Cross Hyb Matching Probes None
SNAP00000026416 1/11 Cross Hyb Matching Probes None
SNAP00000005943 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4501952-4505714(-) 90.42 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK180.2
Entrez Gene 191241 Entrez gene
SwissProt Q23443 EMBL-EBI
WormBase CE36906 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5507 copper ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52965 Hypothetical protein ZK180.1 [Caenorhabditis elegans] ref|NP_500579.2| ZK180.1 [Caenorhabditis elegans] 1.0E-167
blast CAE58539 Hypothetical protein CBG01698 [Caenorhabditis briggsae] 1.0E-156
blast AAB52966 Hypothetical protein ZK180.2 [Caenorhabditis elegans] ref|NP_500580.2| ZK180.2 [Caenorhabditis elegans] 1.0E-136
blast AAB52966 Hypothetical protein ZK180.2 [Caenorhabditis elegans] ref|NP_500580.2| ZK180.2 [Caenorhabditis elegans] 1.0E-124
blast CAE58540 Hypothetical protein CBG01699 [Caenorhabditis briggsae] 1.0E-116
blast XP_688755 PREDICTED: similar to Gamma-aminobutyric acid type B receptor, subunit 2 precursor (GABA-B receptor 2) (GABA-B-R2) (Gb2) (GABABR2) [Danio rerio] 3.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR000337 EMBL-EBI G-protein coupled receptor family 3, metabotropic glutamate receptor-like 1.0E-47
Pfam IPR001828 EMBL-EBI Extracellular ligand-binding receptor 4.5E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005956 7 412-434,447-469,484-506,527-549,583-605,618-640,650-672
Sequence
Target Sequence 
>C. ELEGANS:183308_AT
aaggcactgttcgacttgatcgcttcgagaccaagacccgtggcaattctcggagggcaa
tgcactgaaccccacgaagcgctcacaactcgtctggaacatggcttcggcgtaaaaatc
gtgcataccgcaggtgtcaactgggagcaaatcgagacggttggcggcgagctcgacgag
ctaaaggtttacaatcatccatcactttttccgattttcttccgtttttgtgaacgagat
gttcgaattatcctcgtcgacgtggacgaagagatggcggctaccgtactctgtgcagga
tatcatagaggaatgtatggtgacaactatgtatggattctacctggatatcattccgat
aaatggctgaatcaaactcacgacaattgcactgtcgaggagatgcgggaagcggcaaaa
aatcatttttcagtggaatttgcgttgactagacgagatgtagatactaagattgtgggg
aatacgcaaactgtgattttgaagtacagtgctccacataatgatacggccaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCACTGTTCGACTTGATCGCTT 479 161 208 Antisense
GACCAAGACCCGTGGCAATTCTCGG 411 101 236 Antisense
TCGGAGGGCAATGCACTGAACCCCA 149 607 257 Antisense
GTCTGGAACATGGCTTCGGCGTAAA 106 473 299 Antisense
AATCGTGCATACCGCAGGTGTCAAC 441 167 324 Antisense
AAATCGAGACGGTTGGCGGCGAGCT 559 115 356 Antisense
ATCATCCATCACTTTTTCCGATTTT 101 31 401 Antisense
GGCTACCGTACTCTGTGCAGGATAT 423 537 486 Antisense
GGATTCTACCTGGATATCATTCCGA 285 509 542 Antisense
GATTTTGAAGTACAGTGCTCCACAT 218 429 702 Antisense
GCTCCACATAATGATACGGCCACCC 364 297 718 Antisense
Sequence Source Affymetrix Proprietary Database