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[183307_at]

Description F16B12.6 /REP_DB=WormBase Gene ID /WP=CE09429 /TR=Q93520 /GB=CAB02964.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 50      6grp_total > 26      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 752.9
(3)
P 		334.8
(-3)
P 		373.5
(-2.4)
P 		374.2
(-2.4)
P 		418
B 732.4
(3)
P 		486
(-0.7)
P 		400.9
(-2)
P 		337.9
(-3)
P 		395
C 701.6
(3)
P 		422.4
(-2)
P 		366.3
(-3)
P 		398.4
(-2.4)
P 		335
avr 729
(3) 		414.4
(-2.3) 		380.2
(-2.8) 		370.2
(-3) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 512
1 2 3 4 5 6 range
A 591.1
(3)
P 		497.3
(1.2)
P 		385.1
(-0.9)
P 		286
(-2.8)
P 		277.9
(-3)
P 		373.8
(-1.2)
P 		313
B 785.3
(3)
P 		581.8
(0.5)
P 		415.9
(-1.4)
P 		381.4
(-1.9)
P 		287.2
(-3)
P 		404.9
(-1.6)
P 		498
C 582.1
(3)
P 		551.3
(2.4)
P 		414.9
(-0.2)
P 		273.3
(-3)
P 		289.5
(-2.7)
P 		396.2
(-0.6)
P 		309
avr 652.8
(3) 		543.5
(1.2) 		405.3
(-1) 		313.6
(-2.5) 		284.9
(-3) 		391.6
(-1.3) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 274.1
(3)
P 		72.7
(-2.5)
P 		97.6
(-1.8)
P 		54.8
(-3)
P 		219
B 233.6
(3)
P 		120
(-1.2)
P 		92.9
(-2.2)
P 		72
(-3)
P 		162
C 232.3
(3)
P 		121.4
(-1)
P 		127.7
(-0.8)
P 		67.2
(-3)
P 		165
avr 246.7
(3) 		104.7
(-1.7) 		106.1
(-1.6) 		64.7
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 109
(-0.9)
P 		176.9
(3)
P 		83.9
(-2.3)
P 		72.5
(-3)
P 		83.8
(-2.4)
P 		91
(-1.9)
P 		104
B 273.2
(3)
P 		193.6
(0.2)
P 		101
(-3)
P 		101
(-3)
P 		116.7
(-2.5)
P 		151
(-1.3)
P 		172
C 215.7
(3)
P 		168.2
(1.2)
P 		105.6
(-1.1)
P 		55
(-3)
P 		93.7
(-1.6)
P 		132.6
(-0.1)
P 		161
avr 199.3
(3) 		179.6
(2) 		96.8
(-2) 		76.2
(-3) 		98.1
(-1.9) 		124.9
(-0.6) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17714
Sequence Type Exemplar sequence
Representative Public ID F16B12.6 NCBI
Target Description F16B12.6 /REP_DB=WormBase Gene ID /WP=CE09429 /TR=Q93520 /GB=CAB02964.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077948(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077948 NCBI Caenorhabditis elegans F16B12.6 (F16B12.6) mRNA, complete cds. 11/11 None
SNAP00000024900 ENSEMBL cdna:SNAP chromosome:CEL140:X:14102279:14107599:1 11/11 None
GENEFINDER00000024903 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14102279:14107599:1 11/11 None
F16B12.6 ENSEMBL cdna:known chromosome:CEL140:X:14102279:14107763:1 gene:F16B12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14102278-14107599(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16B12.6
Entrez Gene 181520 Entrez gene
SwissProt Q93520 EMBL-EBI
WormBase CE32383 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02964 Hypothetical protein F16B12.6 [Caenorhabditis elegans] ref|NP_510349.2| F16B12.6 [Caenorhabditis elegans] 0.0
blast CAE60312 Hypothetical protein CBG03903 [Caenorhabditis briggsae] 0.0
blast NP_490674 Y48G1C.8 [Caenorhabditis elegans] gb|AAK29890.2| Hypothetical protein Y48G1C.8 [Caenorhabditis elegans] 1.0E-172
Sequence
Target Sequence 
>C. ELEGANS:183307_AT
aactttctggttctcatgctgacaacgacacttttgtcactgaatggaccggagctgatg
gtgcaggaccatcgacatcggctaaaactgagactgtggaagaggtggtgattgaagagc
aaattccaaaaacaatcatgggtcacgaaatgatgattggaggagacatgattgtcgagc
acattgaagaagttggagacgtctatgggcaatcaatgatgagaagaaatccatttttgg
agaaaagcgtgactactgctggatttgttcgtggatctcagcgatatgatgctctttggc
gaattgcgcaaaaacagtttggttcggagtgcattgatgacacttttgacagcttgttcc
gactattatacgaaaagaacgagcagcgcttgctccaaatgatcaatgagacattccacg
tggacattttctctggcgaccaagagattgtggaggaaggtgtcgaatacatgcaagaag
aacttgttgtgcatcctggtaatcatcttgtcggacacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTTCTGGTTCTCATGCTGACAA 646 139 3650 Antisense
GGACCGGAGCTGATGGTGCAGGACC 125 523 3695 Antisense
GGACCATCGACATCGGCTAAAACTG 428 523 3715 Antisense
GCGTGACTACTGCTGGATTTGTTCG 78 293 3896 Antisense
GGATTTGTTCGTGGATCTCAGCGAT 46 511 3910 Antisense
TATGATGCTCTTTGGCGAATTGCGC 343 655 3934 Antisense
GACACTTTTGACAGCTTGTTCCGAC 399 367 3988 Antisense
GCAGCGCTTGCTCCAAATGATCAAT 684 313 4032 Antisense
CCACGTGGACATTTTCTCTGGCGAC 14 275 4065 Antisense
GAACTTGTTGTGCATCCTGGTAATC 167 351 4129 Antisense
CCTGGTAATCATCTTGTCGGACACG 122 267 4144 Antisense
Sequence Source Affymetrix Proprietary Database