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[183306_at]

Description F40F11.4 /REP_DB=WormBase Gene ID /WP=CE05863 /TR=Q20209 /GB=CAA97795.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 32.2
(-2.5)
A 		54.5
(3)
A 		30.4
(-3)
A 		30.3
(-3)
A 		24
B 34
(-1.1)
A 		51.6
(3)
A 		46.2
(1.7)
A 		25.8
(-3)
A 		26
C 65.7
(2.5)
P 		47.8
(0)
A 		26.1
(-3)
A 		69.1
(3)
A 		43
avr 44
(0.4) 		51.3
(3) 		34.2
(-3) 		41.7
(-0.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 34.6
(0.8)
A 		41.5
(1.8)
A 		49.8
(3)
A 		34.1
(0.8)
A 		18.1
(-1.5)
A 		7.8
(-3)
A 		42
B 52.6
(3)
M 		31.9
(-1.9)
P 		47.8
(1.9)
A 		27.4
(-3)
A 		40.2
(0)
A 		36.6
(-0.8)
A 		25
C 51.3
(-0.4)
A 		82.5
(3)
A 		33.4
(-2.3)
A 		55.2
(0)
A 		27.1
(-3)
A 		48.2
(-0.7)
A 		55
avr 46.2
(1.5) 		52
(3) 		43.7
(0.9) 		38.9
(-0.3) 		28.5
(-3) 		30.9
(-2.4) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.7
(2.9)
A 		11.8
(3)
A 		8
(-0.1)
A 		4.4
(-3)
A 		7
B 10.8
(1.4)
A 		12.7
(3)
A 		10.7
(1.3)
A 		5.5
(-3)
A 		7
C 21.8
(3)
P 		13.7
(-0.8)
A 		9.1
(-3)
A 		11.7
(-1.8)
A 		13
avr 14.8
(3) 		12.7
(1.3) 		9.3
(-1.3) 		7.2
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 6.4
(-0.9)
A 		14.8
(3)
A 		10.9
(1.2)
A 		8.7
(0.2)
A 		5.5
(-1.3)
A 		1.9
(-3)
A 		13
B 18.3
(3)
M 		10.6
(-1.2)
P 		11.6
(-0.7)
A 		7.3
(-3)
A 		16.3
(1.9)
A 		13.6
(0.4)
A 		11
C 19
(0.8)
A 		25.2
(3)
A 		8.5
(-3)
A 		11.1
(-2.1)
A 		8.8
(-2.9)
A 		16.1
(-0.3)
A 		17
avr 14.6
(1.3) 		16.9
(3) 		10.3
(-2) 		9
(-3) 		10.2
(-2.1) 		10.5
(-1.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183306_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9069
Sequence Type Exemplar sequence
Representative Public ID F40F11.4 NCBI
Target Description F40F11.4 /REP_DB=WormBase Gene ID /WP=CE05863 /TR=Q20209 /GB=CAA97795.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069782 NCBI Caenorhabditis elegans F40F11.4 (F40F11.4) mRNA, complete cds. 11/11 None
SNAP00000006484 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11588289:11590379:-1 10/11 None
F40F11.4 ENSEMBL cdna:known chromosome:CEL140:IV:11588289:11590379:-1 gene:F40F11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11588294-11590385(-) 99.88 100.0
Public Domain and Genome References
Gene Title
Ensembl F40F11.4
Entrez Gene 185548 Entrez gene
SwissProt Q20209 EMBL-EBI
WormBase CE05863 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97795 Hypothetical protein F40F11.4 [Caenorhabditis elegans] ref|NP_502183.1| F40F11.4 [Caenorhabditis elegans] 1.0E-170
blast CAA97795 Hypothetical protein F40F11.4 [Caenorhabditis elegans] ref|NP_502183.1| F40F11.4 [Caenorhabditis elegans] 6.0E-99
blast CAE62095 Hypothetical protein CBG06122 [Caenorhabditis briggsae] 2.0E-98
blast CAE62095 Hypothetical protein CBG06122 [Caenorhabditis briggsae] 1.0E-81
Sequence
Target Sequence 
>C. ELEGANS:183306_AT
aaatcttctagatcctgtgctacttgaccaattcgcgaatcaaagcattcgagcacattc
cttactgctcctaccgtattcaaccacccggtacaaaacgtggacaggaaagacattcag
caaacacaacctcatcgatgagtttgttggaaaatcatttgaatgtgcaactgaaagttt
ctgtcctgatccatgttgttctggaataccatcagttgtaagatcgtcttcaaaatatgc
accactctgcaaaatgaattcttgtcaaaaagcgtcgacatgtattgttaagcattttga
aaacgacgatctatcgaaacttcgtctcaatcaattcaatgtgaattgtggttgtgaaga
acctggcacaatctaccgtcccgacattggtcgatgtgttcatcataatccatgcactaa
acaatcactatgtcgagattttggccaggaatgcgtgaatactgcttctggatacaagtg
tgtctgccaacttggatattttcggaatggatccaattcgtgtgctcctctcaagttttc
tgcacctgtttatcatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTTCTAGATCCTGTGCTACTT 690 117 276 Antisense
GTGCTACTTGACCAATTCGCGAATC 124 479 292 Antisense
AGCATTCGAGCACATTCCTTACTGC 325 79 319 Antisense
GACATTCAGCAAACACAACCTCATC 320 371 387 Antisense
TGAAAGTTTCTGTCCTGATCCATGT 59 573 447 Antisense
TGAAGAACCTGGCACAATCTACCGT 367 573 630 Antisense
ATCTACCGTCCCGACATTGGTCGAT 61 31 646 Antisense
GGAATGCGTGAATACTGCTTCTGGA 383 533 723 Antisense
AATGGATCCAATTCGTGTGCTCCTC 173 163 781 Antisense
TGTGCTCCTCTCAAGTTTTCTGCAC 374 557 796 Antisense
GTTTTCTGCACCTGTTTATCATGGA 326 449 810 Antisense
Sequence Source Affymetrix Proprietary Database