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[183305_at] 7TM chemoreceptor, srx family

Description C14C6.1 /REP_DB=WormBase Gene ID /WP=CE08156 /TR=O44674 /GB=AAB94268.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 27      6grp_cgc > 81      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 1.4
(-3)
A 		26.5
(-1.1)
A 		26
(-1.2)
A 		81.7
(3)
A 		80
B 36.8
(0.2)
A 		61.3
(3)
A 		8
(-3)
A 		27.6
(-0.8)
A 		53
C 21
(-1.4)
A 		33.8
(-0.2)
A 		4.1
(-3)
A 		68.6
(3)
A 		65
avr 19.7
(-2.1) 		40.5
(0.6) 		12.7
(-3) 		59.3
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 23.7
(0.8)
A 		23
(0.6)
A 		36.8
(3)
A 		8.6
(-1.8)
A 		16.7
(-0.4)
A 		1.7
(-3)
A 		35
B 40.9
(3)
A 		2.5
(-3)
A 		4.5
(-2.7)
A 		5.8
(-2.5)
A 		20
(-0.3)
A 		12.3
(-1.5)
A 		38
C 1.2
(-3)
A 		51.1
(3)
A 		47.4
(2.6)
A 		32.6
(0.8)
A 		2.9
(-2.8)
A 		17.4
(-1.1)
A 		50
avr 21.9
(0.6) 		25.5
(1.7) 		29.6
(3) 		15.7
(-1.4) 		13.2
(-2.2) 		10.5
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.5
(-3)
A 		5.7
(-0.3)
A 		6.8
(0.3)
A 		12
(3)
A 		12
B 11.7
(1.5)
A 		15.1
(3)
A 		1.9
(-3)
A 		5.9
(-1.2)
A 		13
C 7
(0.3)
A 		9.7
(1.9)
A 		1.4
(-3)
A 		11.6
(3)
A 		10
avr 6.4
(-0.4) 		10.2
(3) 		3.4
(-3) 		9.8
(2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 4.4
(0.1)
A 		8.2
(3)
A 		8
(2.8)
A 		2.2
(-1.6)
A 		5.1
(0.6)
A 		0.4
(-3)
A 		8
B 14.2
(3)
A 		0.8
(-3)
A 		1.1
(-2.9)
A 		1.5
(-2.7)
A 		8.1
(0.3)
A 		4.6
(-1.3)
A 		13
C 0.4
(-3)
A 		15.6
(3)
A 		12.1
(1.6)
A 		6.6
(-0.6)
A 		0.9
(-2.8)
A 		5.8
(-0.9)
A 		15
avr 6.3
(0.6) 		8.2
(3) 		7.1
(1.6) 		3.4
(-3) 		4.7
(-1.4) 		3.6
(-2.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183305_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15512
Sequence Type Exemplar sequence
Representative Public ID C14C6.1 NCBI
Target Description C14C6.1 /REP_DB=WormBase Gene ID /WP=CE08156 /TR=O44674 /GB=AAB94268.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070844 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-7) (srx-7) mRNA, complete cds. 11/11 None
SNAP00000017699 ENSEMBL cdna:SNAP chromosome:CEL140:V:562279:562968:1 9/11 None
GENEFINDER00000017710 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:559054:562785:1 11/11 None
C14C6.1 ENSEMBL cdna:known chromosome:CEL140:V:560527:562785:1 gene:C14C6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:560526-562785(+) 97.23 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-7
Ensembl C14C6.1
Entrez Gene 182600 Entrez gene
SwissProt O44674 EMBL-EBI
WormBase CE36375 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94268 Serpentine receptor, class x protein 7 [Caenorhabditis elegans] ref|NP_503245.3| Serpentine Receptor, class X family member (srx-7) [Caenorhabditis elegans] 1.0E-169
blast AAB94267 Serpentine receptor, class x protein 8 [Caenorhabditis elegans] ref|NP_503244.2| Serpentine Receptor, class X family member (srx-8) [Caenorhabditis elegans] 1.0E-133
blast AAB94268 Serpentine receptor, class x protein 7 [Caenorhabditis elegans] ref|NP_503245.3| Serpentine Receptor, class X family member (srx-7) [Caenorhabditis elegans] 1.0E-112
blast AAB94267 Serpentine receptor, class x protein 8 [Caenorhabditis elegans] ref|NP_503244.2| Serpentine Receptor, class X family member (srx-8) [Caenorhabditis elegans] 4.0E-83
blast CAE65415 Hypothetical protein CBG10369 [Caenorhabditis briggsae] 4.0E-82
blast AAB94268 Serpentine receptor, class x protein 7 [Caenorhabditis elegans] ref|NP_503245.3| Serpentine Receptor, class X family member (srx-7) [Caenorhabditis elegans] 6.0E-80
blast AAB94267 Serpentine receptor, class x protein 8 [Caenorhabditis elegans] ref|NP_503244.2| Serpentine Receptor, class X family member (srx-8) [Caenorhabditis elegans] 4.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503245.3 8 5-27,40-62,83-105,120-142,144-166,176-198,219-241,251-273
C14C6.1 8 5-27,40-62,83-105,120-142,144-166,176-198,219-241,251-273
SNAP00000017699 3 20-42,63-85,95-117
GENEFINDER00000017710 4 67-89,117-139,163-185,195-217
Sequence
Target Sequence 
>C. ELEGANS:183305_AT
ttttgtcgtacacttcttctattcatcccgatcatcgcagtggcttcagccgcagccacg
ttttcacagtacatctttccatgttgcatattcataggcgatatttcaataatgtcgtat
atggctgtcactattccaaatgtgtattcatactccaaactgatcatactttcatttgac
ttattttgcactgggatatcgacggtttgctatgcgtgcgttttcatgactatacgaaat
gccaataaaaaagttgaagacgctttaaagagcaaaaagagaaaacaagataccagatat
cttgtgcagtttgtgttcatctccattttctacatcgctgcctggtctctattctacgtt
ctaccgtatatagttccagctgacaaaccaacattttacgcagctgttccattcttcatc
accctaaacggatcctctaactcgatcattttcctgtcctacaacatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGTCGTACACTTCTTCTATTCA 462 677 346 Antisense
TTCTATTCATCCCGATCATCGCAGT 475 691 362 Antisense
TGGGATATCGACGGTTTGCTATGCG 479 553 537 Antisense
TGCTATGCGTGCGTTTTCATGACTA 521 579 553 Antisense
TCTTGTGCAGTTTGTGTTCATCTCC 287 617 645 Antisense
TGTGTTCATCTCCATTTTCTACATC 36 557 657 Antisense
GTTCTACCGTATATAGTTCCAGCTG 8 445 703 Antisense
GACAAACCAACATTTTACGCAGCTG 609 365 727 Antisense
TCCATTCTTCATCACCCTAAACGGA 287 589 753 Antisense
GGATCCTCTAACTCGATCATTTTCC 197 513 775 Antisense
TCATTTTCCTGTCCTACAACATCGA 611 619 791 Antisense
Sequence Source Affymetrix Proprietary Database