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[183303_at] 7TM receptor, sre family

Description T07C12.6 /REP_DB=WormBase Gene ID /WP=CE06388 /TR=Q22284 /GB=CAA98285.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 27      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1
(-3)
A 		1.8
(-2.6)
A 		2.2
(-2.5)
A 		14.2
(3)
A 		13
B 2.5
(-2.3)
A 		13.6
(3)
A 		1
(-3)
A 		1.4
(-2.8)
A 		13
C 1.3
(-3)
A 		1.4
(-2.5)
A 		1.5
(-2)
A 		2.5
(3)
A 		1
avr 1.6
(-3) 		5.6
(2.5) 		1.6
(-3) 		6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.9
(-2.2)
A 		7.8
(0.4)
A 		9.5
(1.3)
A 		12.7
(3)
A 		1.4
(-3)
A 		2
(-2.7)
A 		11
B 5.5
(3)
A 		2
(-1.8)
A 		2.8
(-0.7)
A 		4
(1)
A 		1.1
(-3)
A 		1.5
(-2.5)
A 		4
C 1.4
(-3)
A 		4.2
(3)
A 		1.7
(-2.4)
A 		1.6
(-2.6)
A 		3.2
(0.9)
A 		1.6
(-2.6)
A 		3
avr 3.3
(-0.8) 		4.7
(1.1) 		4.7
(1.1) 		6.1
(3) 		1.9
(-2.7) 		1.7
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.4
(-3)
A 		0.4
(-3)
A 		0.6
(-2.3)
A 		2.1
(3)
A 		2
B 0.8
(-1.9)
A 		3.4
(3)
A 		0.2
(-3)
A 		0.3
(-2.8)
A 		3
C 0.4
(-3)
A 		0.4
(-3)
A 		0.5
(3)
A 		0.4
(-3)
A 		0
avr 0.5
(-2.4) 		1.4
(3) 		0.4
(-3) 		0.9
(0) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.5
(-2.8)
A 		2.8
(2.1)
A 		2.1
(0.6)
A 		3.2
(3)
A 		0.4
(-3)
A 		0.5
(-2.8)
A 		3
B 1.9
(3)
A 		0.7
(-1.8)
A 		0.7
(-1.8)
A 		1.1
(-0.2)
A 		0.4
(-3)
A 		0.6
(-2.2)
A 		2
C 0.5
(-1.8)
A 		1.3
(3)
A 		0.4
(-2.4)
A 		0.3
(-3)
A 		1
(1.2)
A 		0.5
(-1.8)
A 		1
avr 1
(-0.3) 		1.6
(3) 		1.1
(0.3) 		1.5
(2.5) 		0.6
(-2.5) 		0.5
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11952
Sequence Type Exemplar sequence
Representative Public ID T07C12.6 NCBI
Target Description T07C12.6 /REP_DB=WormBase Gene ID /WP=CE06388 /TR=Q22284 /GB=CAA98285.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073159(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073159 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-28) (sre-28) mRNA, complete cds. 11/11 None
SNAP00000001528 ENSEMBL cdna:SNAP chromosome:CEL140:V:9947979:9948477:1 9/11 None
GENEFINDER00000001542 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9947311:9948477:1 11/11 None
T07C12.6 ENSEMBL cdna:known chromosome:CEL140:V:9946975:9948477:1 gene:T07C12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9946974-9948477(+) 98.06 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-28
Ensembl T07C12.6
Entrez Gene 188216 Entrez gene
SwissProt Q22284 EMBL-EBI
WormBase CE06388 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98285 Hypothetical protein T07C12.6 [Caenorhabditis elegans] ref|NP_505560.1| Serpentine Receptor, class E (epsilon) family member (sre-28) [Caenorhabditis elegans] 0.0
blast CAA98285 Hypothetical protein T07C12.6 [Caenorhabditis elegans] ref|NP_505560.1| Serpentine Receptor, class E (epsilon) family member (sre-28) [Caenorhabditis elegans] 1.0E-130
blast CAE73502 Hypothetical protein CBG20959 [Caenorhabditis briggsae] 9.0E-88
blast CAA19545 Hypothetical protein Y57A10C.3 [Caenorhabditis elegans] ref|NP_496636.1| Serpentine Receptor, class E (epsilon) family member (sre-27) [Caenorhabditis elegans] sp|O62488|SRE27_CAEEL Serpentine receptor class epsilon-27 (Protein sre-27) 7.0E-85
blast CAA98285 Hypothetical protein T07C12.6 [Caenorhabditis elegans] ref|NP_505560.1| Serpentine Receptor, class E (epsilon) family member (sre-28) [Caenorhabditis elegans] 1.0E-63
blast CAE73502 Hypothetical protein CBG20959 [Caenorhabditis briggsae] 3.0E-58
blast CAB05752 Hypothetical protein F57G9.4 [Caenorhabditis elegans] ref|NP_496631.1| Serpentine Receptor, class E (epsilon) family member (sre-29) [Caenorhabditis elegans] sp|O62269|SRE29_CAEEL Serpentine receptor class epsilon-29 (Protein sre-29) 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.2E-63
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505560.1 6 27-46,59-81,131-153,166-188,192-214,256-278
T07C12.6 6 27-46,59-81,131-153,166-188,192-214,256-278
SNAP00000001528 1 31-53
GENEFINDER00000001542 4 20-42,54-76,80-102,144-166
Sequence
Target Sequence 
>C. ELEGANS:183303_AT
ttggattcctgttgtactcattgcaataacacaatttttttcaattactgttgcattggg
aaatctttttgaaataattggaatactcgcattcaatggtttttggatattcactggagc
aatatcagtaattcttcatcttgtcatcaagaaaataaataacgactggcaatgtgaaat
ggaaagcccgagacgaaaaaagttcttcactatttcccaaagatttcaagtgaaggagaa
tttacgtgctctacgagttggcaggagattggttatatcagttattgtgactgtagttgt
ttgtggtgttgggattattgcgctcattcttgaagtggttccaccatttttatgtcattt
tgttgaaaactgcatttacctaaatccattccttatatgcacagtcacaatgtacagcac
tcatgcgtggagaaatgaatttacaaaatattttccgtgttgtcggtattttggaattgc
caaaaaagtgaagatagcaacagttctgtcaatcgcggattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGATTCCTGTTGTACTCATTGCA 206 709 510 Antisense
CAGTAATTCTTCATCTTGTCATCAA 623 207 635 Antisense
AAGTTCTTCACTATTTCCCAAAGAT 473 155 709 Antisense
GAATTTACGTGCTCTACGAGTTGGC 366 323 747 Antisense
GGTGTTGGGATTATTGCGCTCATTC 245 501 814 Antisense
GCGCTCATTCTTGAAGTGGTTCCAC 19 289 829 Antisense
GTGGTTCCACCATTTTTATGTCATT 387 489 844 Antisense
GCATTTACCTAAATCCATTCCTTAT 458 307 881 Antisense
CATTCCTTATATGCACAGTCACAAT 450 217 896 Antisense
AATGTACAGCACTCATGCGTGGAGA 98 165 918 Antisense
CAACAGTTCTGTCAATCGCGGATTC 488 189 1007 Antisense
Sequence Source Affymetrix Proprietary Database