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[183301_s_at]

Description F35C5.12 /REP_DB=WormBase Gene ID /WP=CE18661 /TR=O45448 /GB=CAB04528.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 20      4grp_total > 58      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 50
(-1.9)
A 		247.4
(3)
P 		151.4
(0.6)
P 		7.2
(-3)
A 		240
B 122.3
(0.8)
A 		189.1
(3)
P 		187.8
(3)
P 		7.1
(-3)
A 		182
C 87.6
(-1.2)
A 		180
(3)
P 		174.8
(2.8)
P 		47.2
(-3)
A 		133
avr 86.6
(-0.9) 		205.5
(3) 		171.3
(1.9) 		20.5
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 89.9
(-1.9)
A 		328.5
(3)
P 		266.2
(1.7)
P 		252
(1.4)
P 		222.5
(0.8)
P 		37.7
(-3)
A 		291
B 123.9
(-1.9)
M 		257.2
(2.5)
P 		273.2
(3)
P 		228.6
(1.5)
P 		244.8
(2.1)
P 		92
(-3)
P 		181
C 87
(-3)
P 		272.9
(3)
P 		251.1
(2.3)
P 		265.1
(2.7)
P 		224.6
(1.4)
P 		102.5
(-2.5)
P 		186
avr 100.3
(-2.3) 		286.2
(3) 		263.5
(2.3) 		248.6
(1.9) 		230.6
(1.4) 		77.4
(-3) 		209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 18.2
(-1)
A 		53.7
(3)
P 		39.6
(1.4)
P 		1
(-3)
A 		53
B 39
(2)
A 		46.7
(3)
P 		43.5
(2.6)
P 		1.5
(-3)
A 		45
C 29
(-0.6)
A 		51.8
(2)
P 		60.9
(3)
P 		8
(-3)
A 		53
avr 28.7
(0.2) 		50.7
(3) 		48
(2.7) 		3.5
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 16.6
(-2.6)
A 		116.8
(3)
P 		58
(-0.3)
P 		63.9
(0.1)
P 		67.1
(0.2)
P 		9.2
(-3)
A 		108
B 43.1
(-2.2)
M 		85.6
(1.7)
P 		66.4
(-0)
P 		60.6
(-0.6)
P 		99.5
(3)
P 		34.3
(-3)
P 		65
C 32.2
(-3)
P 		83.3
(3)
P 		63.9
(0.7)
P 		53.3
(-0.5)
P 		72.7
(1.8)
P 		34.3
(-2.8)
P 		51
avr 30.6
(-2.6) 		95.2
(3) 		62.8
(0.2) 		59.3
(-0.1) 		79.8
(1.7) 		25.9
(-3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183301_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3929
Sequence Type Exemplar sequence
Representative Public ID F35C5.12 NCBI
Target Description F35C5.12 /REP_DB=WormBase Gene ID /WP=CE18661 /TR=O45448 /GB=CAB04528.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064348 NCBI Caenorhabditis elegans F35C5.12 (F35C5.12) mRNA, complete cds. 11/11 None
GENEFINDER00000007556 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12910202:12911203:-1 9/11 None
F35C5.12 ENSEMBL cdna:known chromosome:CEL140:II:12910124:12914467:-1 gene:F35C5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007548 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12910198-12914400(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35C5.12
Entrez Gene 174930 Entrez gene
SwissProt O45448 EMBL-EBI
WormBase CE18661 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6952 defense response inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03062 Hypothetical protein F35C5.12 [Caenorhabditis elegans] emb|CAB04528.1| Hypothetical protein F35C5.12 [Caenorhabditis elegans] ref|NP_496749.1| F35C5.12 [Caenorhabditis elegans] 2.0E-65
blast CAB03062 Hypothetical protein F35C5.12 [Caenorhabditis elegans] emb|CAB04528.1| Hypothetical protein F35C5.12 [Caenorhabditis elegans] ref|NP_496749.1| F35C5.12 [Caenorhabditis elegans] 9.0E-64
blast CAE60625 Hypothetical protein CBG04268 [Caenorhabditis briggsae] 2.0E-58
blast CAE60625 Hypothetical protein CBG04268 [Caenorhabditis briggsae] 1.0E-56
Sequence
Target Sequence 
>C. ELEGANS:183301_S_AT
gttgcagccgttcagggtcagaggcgcgtgcacttttctcgaccatcaagcatgtgacga
agtgtgtaagacggatagtttttggtatggacattgtaatgggtgggatgggttcaattt
cagctgcaaatgctatgaatacattaccccactagatggaagtatttgcgaaacccgaca
aatggcatgctcggaaaagtgcaaggatcagggctccgaaggcggcttctgcttcccaca
actcgattctcacaaatcgctccgcaccgcgtgtgaatgtttcaagaagctgcaggtctt
gcgacgaaagcgccgaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCAGCCGTTCAGGGTCAGAGGC 514 439 45 Antisense
GCCGTTCAGGGTCAGAGGCGCGTGC 215 285 51 Antisense
TCTCGACCATCAAGCATGTGACGAA 611 611 81 Antisense
GGGATGGGTTCAATTTCAGCTGCAA 13 497 149 Antisense
GCTATGAATACATTACCCCACTAGA 97 303 176 Antisense
GATGGAAGTATTTGCGAAACCCGAC 551 405 199 Antisense
AAACCCGACAAATGGCATGCTCGGA 331 125 215 Antisense
GTGCAAGGATCAGGGCTCCGAAGGC 175 481 243 Antisense
TCCGCACCGCGTGTGAATGTTTCAA 675 591 305 Antisense
AGAAGCTGCAGGTCTTGCGACGAAA 44 75 329 Antisense
GGTCTTGCGACGAAAGCGCCGAAGC 115 503 339 Antisense
Sequence Source Affymetrix Proprietary Database