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[183300_at]

Description F41A4.1 /REP_DB=WormBase Gene ID /WP=CE17817 /TR=O61834 /GB=AAC17538.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      4grp_high_8_8 > 45      6grp_total > 90      4grp_total > 50      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 54.1
(-3)
P 		269
(3)
P 		195.1
(0.9)
P 		108.8
(-1.5)
P 		215
B 102.7
(-1.1)
P 		219.3
(3)
P 		151.2
(0.6)
P 		50.5
(-3)
A 		169
C 87.5
(-1.3)
P 		180.2
(3)
P 		160
(2.1)
P 		49.5
(-3)
M 		131
avr 81.4
(-2.5) 		222.8
(3) 		168.8
(0.9) 		69.6
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 181.3
(1.1)
M 		159.1
(0)
P 		115.3
(-2.1)
P 		221.5
(3)
P 		96.5
(-3)
P 		108.8
(-2.4)
P 		125
B 88.9
(-3)
P 		150.9
(-0.3)
P 		95.1
(-2.7)
P 		228.4
(3)
P 		108.1
(-2.2)
P 		121.2
(-1.6)
P 		140
C 88.9
(-3)
P 		136
(-0.9)
P 		122.3
(-1.5)
P 		225
(3)
P 		153.3
(-0.2)
P 		109.1
(-2.1)
P 		136
avr 119.7
(-2.5) 		148.7
(-1) 		110.9
(-3) 		225
(3) 		119.3
(-2.6) 		113
(-2.9) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 19.7
(-2.5)
P 		58.4
(3)
P 		51
(2)
P 		15.9
(-3)
P 		43
B 32.8
(0)
P 		54.2
(3)
P 		35
(0.3)
P 		10.8
(-3)
A 		43
C 29
(-0.4)
P 		51.8
(2.5)
P 		55.8
(3)
P 		8.4
(-3)
M 		47
avr 27.2
(-0.8) 		54.8
(3) 		47.3
(2) 		11.7
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 33.4
(-1.4)
M 		56.6
(3)
P 		25.1
(-3)
P 		56.2
(2.9)
P 		29.1
(-2.2)
P 		26.5
(-2.7)
P 		32
B 30.9
(-1.7)
P 		50.2
(1.3)
P 		23.1
(-3)
P 		60.5
(3)
P 		43.9
(0.3)
P 		45.2
(0.5)
P 		37
C 33
(-2.4)
P 		41.5
(0.4)
P 		31.1
(-3)
P 		45.3
(1.6)
P 		49.6
(3)
P 		36.5
(-1.2)
P 		19
avr 32.4
(-1.7) 		49.4
(2) 		26.4
(-3) 		54
(3) 		40.9
(0.2) 		36.1
(-0.9) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183300_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10528
Sequence Type Exemplar sequence
Representative Public ID F41A4.1 NCBI
Target Description F41A4.1 /REP_DB=WormBase Gene ID /WP=CE17817 /TR=O61834 /GB=AAC17538.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067570(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067570 NCBI Caenorhabditis elegans F41A4.1 (F41A4.1) mRNA, complete cds. 11/11 None
SNAP00000007815 ENSEMBL cdna:SNAP chromosome:CEL140:IV:685136:688143:1 11/11 None
GENEFINDER00000007818 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:684505:688143:1 11/11 None
F41A4.1 ENSEMBL cdna:known chromosome:CEL140:IV:684497:688326:1 gene:F41A4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:684510-688149(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41A4.1
Entrez Gene 176895 Entrez gene
SwissProt O61834 EMBL-EBI
WormBase CE37517 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624990_AT dm
DROSGENOME1:151691_AT dm
DROSGENOME1:142808_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
7596 blood coagulation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4252 serine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17538 Hypothetical protein F41A4.1 [Caenorhabditis elegans] ref|NP_499971.2| F41A4.1 [Caenorhabditis elegans] 0.0
blast CAE73750 Hypothetical protein CBG21281 [Caenorhabditis briggsae] 0.0
blast XP_396702 PREDICTED: similar to CG7802-PA, isoform A [Apis mellifera] 1.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 4.6E-10
Pfam IPR003014 EMBL-EBI N/apple PAN 1.7E-22
Pfam IPR003014 EMBL-EBI N/apple PAN 6.3E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 1.1E-8
Pfam IPR003014 EMBL-EBI N/apple PAN 6.3E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 1.7E-22
Pfam IPR003014 EMBL-EBI N/apple PAN 6.3E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499971.2 1 642-664
F41A4.1 1 642-664
SNAP00000007815 1 471-493
GENEFINDER00000007818 1 557-579
Sequence
Target Sequence 
>C. ELEGANS:183300_AT
atggatggattatgcttgccgttaagaactcggctgaagattttacaactgaagtggtgt
accatgcaatgatggagacatgtacagttggatgcatgccaaaatgtaatcaagacatga
tgcttcctgaggaggagaccaacgttcattccctccccttatcactggatcttccacgac
atcgtatggtccgaaggtctctggccggggagccgagggagctgcaattgacaagtgatg
tatataaagtaactggacacaaattgacacttctgaatcctccttcaccaaagcaattcg
acttcccagctcccaagtcagacttcgagttcaatgacaacggagagttccacgaaggag
atgtgatcgttgtgaagcattctccaaatctttggacaagtgtgaagcattgtcttattg
atgacgtcacgtgtatgctcacagtggttctgggagctattcagatgtttctcatgttct
catg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATGGATTATGCTTGCCGTTAA 705 51 1340 Antisense
GGAGGAGACCAACGTTCATTCCCTC 10 515 1470 Antisense
TTATCACTGGATCTTCCACGACATC 268 679 1498 Antisense
TCGTATGGTCCGAAGGTCTCTGGCC 682 597 1521 Antisense
GGGAGCCGAGGGAGCTGCAATTGAC 434 495 1547 Antisense
AAATTGACACTTCTGAATCCTCCTT 610 113 1600 Antisense
GAATCCTCCTTCACCAAAGCAATTC 84 323 1614 Antisense
ACCAAAGCAATTCGACTTCCCAGCT 613 83 1626 Antisense
CCAGCTCCCAAGTCAGACTTCGAGT 295 273 1645 Antisense
GACGTCACGTGTATGCTCACAGTGG 710 375 1762 Antisense
TTCAGATGTTTCTCATGTTCTCATG 429 687 1799 Antisense
Sequence Source Affymetrix Proprietary Database