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[183299_at]

Description T09E11.7 /REP_DB=WormBase Gene ID /WP=CE13509 /TR=O02307 /GB=CAB03534.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 8.6
(-3)
A 		35.7
(3)
A 		8.7
(-3)
A 		15.3
(-1.5)
A 		27
B 5.8
(-3)
A 		6.3
(-2.8)
A 		23.3
(3)
A 		8.4
(-2.1)
A 		18
C 42.8
(1.9)
A 		47.8
(3)
A 		21.1
(-3)
A 		25.3
(-2.1)
A 		27
avr 19.1
(-1.8) 		29.9
(3) 		17.7
(-2.4) 		16.3
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 33.3
(0.8)
A 		4.3
(-3)
A 		50.4
(3)
A 		6.4
(-2.7)
A 		13
(-1.9)
A 		7.7
(-2.6)
A 		46
B 5.9
(-2.2)
A 		7.8
(-1.7)
A 		28.2
(3)
A 		2.4
(-3)
A 		5.5
(-2.3)
A 		3
(-2.9)
A 		26
C 3.6
(-3)
A 		17.5
(-1.3)
A 		52.5
(3)
A 		25.1
(-0.4)
A 		13.3
(-1.8)
A 		6.6
(-2.6)
A 		49
avr 14.3
(-1.7) 		9.9
(-2.4) 		43.7
(3) 		11.3
(-2.1) 		10.6
(-2.2) 		5.8
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.1
(-2)
A 		7.8
(3)
A 		2.3
(-2.9)
A 		2.2
(-3)
A 		6
B 1.8
(-2.7)
A 		1.6
(-3)
A 		5.4
(3)
A 		1.8
(-2.7)
A 		4
C 14.2
(3)
A 		13.7
(2.7)
A 		7.4
(-1.1)
A 		4.3
(-3)
A 		10
avr 6.4
(1.4) 		7.7
(3) 		5
(-0.3) 		2.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.1
(-0.1)
A 		1.5
(-3)
A 		11
(3)
A 		1.6
(-2.9)
A 		3.9
(-1.5)
A 		1.9
(-2.7)
A 		10
B 2
(-1.6)
A 		2.6
(-1.1)
A 		6.8
(3)
A 		0.6
(-3)
A 		2.2
(-1.5)
A 		1.1
(-2.5)
A 		6
C 1.3
(-3)
A 		5.3
(-1)
A 		13.4
(3)
A 		5.1
(-1.1)
A 		4.3
(-1.5)
A 		2.2
(-2.6)
A 		12
avr 3.1
(-2) 		3.1
(-2) 		10.4
(3) 		2.4
(-2.5) 		3.5
(-1.8) 		1.7
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183299_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2129
Sequence Type Exemplar sequence
Representative Public ID T09E11.7 NCBI
Target Description T09E11.7 /REP_DB=WormBase Gene ID /WP=CE13509 /TR=O02307 /GB=CAB03534.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060726(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060726 NCBI Caenorhabditis elegans T09E11.7 (T09E11.7) mRNA, complete cds. 11/11 None
SNAP00000042466 ENSEMBL cdna:SNAP chromosome:CEL140:I:12363197:12364459:1 11/11 None
T09E11.7 ENSEMBL cdna:known chromosome:CEL140:I:12361628:12364459:1 gene:T09E11.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042475 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12361558-12364390(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09E11.7
Entrez Gene 188335 Entrez gene
SwissProt O02307 EMBL-EBI
WormBase CE13509 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03534 Hypothetical protein T09E11.7 [Caenorhabditis elegans] ref|NP_493127.1| T09E11.7 [Caenorhabditis elegans] 0.0
blast CAB03533 Hypothetical protein T09E11.4 [Caenorhabditis elegans] ref|NP_493129.2| T09E11.4 [Caenorhabditis elegans] 0.0
blast NP_502342 C42C1.7 [Caenorhabditis elegans] gb|AAB97548.2| Hypothetical protein C42C1.7 [Caenorhabditis elegans] 0.0
blast CAB03534 Hypothetical protein T09E11.7 [Caenorhabditis elegans] ref|NP_493127.1| T09E11.7 [Caenorhabditis elegans] 1.0E-166
blast CAB03529 Hypothetical protein T09E11.5 [Caenorhabditis elegans] ref|NP_493128.1| T09E11.5 [Caenorhabditis elegans] 1.0E-122
blast CAB03533 Hypothetical protein T09E11.4 [Caenorhabditis elegans] ref|NP_493129.2| T09E11.4 [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.4E-114
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493127.1 10 12-29,49-71,78-100,148-165,170-187,241-258,265-282,292-314,321-343,353-370
T09E11.7 10 12-29,49-71,78-100,148-165,170-187,241-258,265-282,292-314,321-343,353-370
Sequence
Target Sequence 
>C. ELEGANS:183299_AT
cagtctagcctcgtacaccgaaaatgcgtgtgaaccattggctgcttatgagcataaagc
tgattgcaaatctaaattgaaaaactttatcgatttccttgaaaccacacaaccggacta
tgcattcattttaacaagattttttgcaacaggagttgtaacaaactctacaagctccac
agacgaggacccaatctatttggaaatgagggagcagatgggaaaacttcttccaaatat
taaaaagaagctgtatattctagatgcatttcctagaccgagcatggtgtatattttgca
agtggcaaaggatttgaagaatgggagaaatgtggatgagattcataaagatcttgtcca
attcgatacatataaactggctcgtcaacggactgaagccatcgtcaaggaatgcggcaa
taagtgtgagctcatcgactatgagccactgctattcaacaaaacctccaatcgtttcga
atttttcgattctcgggggttcctttactttacaatagtcaatcatctctccgctcatgg
agtggaattgatccggccgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTCTAGCCTCGTACACCGAAAAT 496 207 1413 Antisense
GCGTGTGAACCATTGGCTGCTTATG 242 293 1438 Antisense
CGATTTCCTTGAAACCACACAACCG 283 249 1503 Antisense
CTCCACAGACGAGGACCCAATCTAT 495 235 1587 Antisense
GCATTTCCTAGACCGAGCATGGTGT 579 307 1678 Antisense
GAAGCCATCGTCAAGGAATGCGGCA 424 345 1807 Antisense
GCGGCAATAAGTGTGAGCTCATCGA 531 293 1826 Antisense
GACTATGAGCCACTGCTATTCAACA 374 373 1849 Antisense
TACAATAGTCAATCATCTCTCCGCT 540 641 1923 Antisense
ATCATCTCTCCGCTCATGGAGTGGA 33 31 1934 Antisense
TGGAGTGGAATTGATCCGGCCGATA 388 539 1950 Antisense
Sequence Source Affymetrix Proprietary Database