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[183298_at] 7TM chemoreceptor, srz family

Description F56D6.5 /REP_DB=WormBase Gene ID /WP=CE17909 /TR=O61837 /GB=AAC17549.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 33      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 39.9
(-3)
A 		82.4
(2.3)
A 		65.8
(0.3)
A 		87.7
(3)
A 		48
B 49
(-3)
A 		131.8
(1.5)
A 		159.2
(3)
A 		79.4
(-1.3)
A 		110
C 80.4
(-2.3)
A 		69.6
(-3)
A 		89.3
(-1.6)
A 		156.5
(3)
A 		87
avr 56.4
(-3) 		94.6
(1.5) 		104.8
(2.6) 		107.9
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 47.4
(-3)
A 		131.8
(2.6)
A 		131.2
(2.5)
A 		138.2
(3)
A 		131.6
(2.6)
A 		51.7
(-2.7)
A 		91
B 90.7
(-0.9)
A 		112
(0.4)
A 		92.2
(-0.8)
A 		104
(-0.1)
A 		155.6
(3)
P 		55
(-3)
A 		101
C 75
(-3)
A 		100.2
(-0.9)
A 		106
(-0.5)
A 		98
(-1.1)
A 		148.1
(3)
P 		81.2
(-2.5)
A 		73
avr 71
(-2.4) 		114.7
(0.8) 		109.8
(0.4) 		113.4
(0.7) 		145.1
(3) 		62.6
(-3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 14.5
(-1)
A 		17.9
(3)
A 		17.2
(2.2)
A 		12.8
(-3)
A 		5
B 15.6
(-3)
A 		32.6
(1.8)
A 		36.9
(3)
A 		16.9
(-2.6)
A 		21
C 26.6
(0.6)
A 		20
(-3)
A 		31.1
(3)
A 		26.4
(0.5)
A 		11
avr 18.9
(-2.9) 		23.5
(-0) 		28.4
(3) 		18.7
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 8.7
(-3)
A 		46.9
(3)
A 		28.6
(0.1)
A 		35
(1.1)
A 		39.7
(1.9)
A 		12.6
(-2.4)
A 		38
B 31.6
(-1.4)
A 		37.3
(-0.6)
A 		22.4
(-2.7)
A 		27.5
(-2)
A 		63.2
(3)
P 		20.5
(-3)
A 		43
C 27.8
(-1.3)
A 		30.6
(-0.7)
A 		27
(-1.4)
A 		19.7
(-3)
A 		47.9
(3)
P 		27.2
(-1.4)
A 		28
avr 22.7
(-2.5) 		38.3
(0.6) 		26
(-1.8) 		27.4
(-1.5) 		50.3
(3) 		20.1
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10546
Sequence Type Exemplar sequence
Representative Public ID F56D6.5 NCBI
Target Description F56D6.5 /REP_DB=WormBase Gene ID /WP=CE17909 /TR=O61837 /GB=AAC17549.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068034 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-20) (srz-20) mRNA, complete cds. 11/11 None
GENEFINDER00000037046 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3914756:3917049:1 11/11 None
F56D6.5 ENSEMBL cdna:known chromosome:CEL140:IV:3915604:3916819:1 gene:F56D6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3914761-3916825(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
Gene Symbol srz-20
Ensembl F56D6.5
Entrez Gene 186389 Entrez gene
SwissProt Q8ITX6 EMBL-EBI
WormBase CE37382 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN73863 Serpentine receptor, class z protein 20 [Caenorhabditis elegans] ref|NP_500435.2| Serpentine Receptor, class Z family member (srz-20) [Caenorhabditis elegans] 1.0E-165
blast AAN73863 Serpentine receptor, class z protein 20 [Caenorhabditis elegans] ref|NP_500435.2| Serpentine Receptor, class Z family member (srz-20) [Caenorhabditis elegans] 1.0E-164
blast AAN73862 Serpentine receptor, class z protein 19 [Caenorhabditis elegans] ref|NP_500436.2| Serpentine Receptor, class Z family member (srz-19) [Caenorhabditis elegans] 5.0E-82
blast AAU05587 Serpentine receptor, class z protein 67 [Caenorhabditis elegans] ref|NP_001021965.1| Serpentine Receptor, class Z family member (srz-67) [Caenorhabditis elegans] 2.0E-42
blast AAU05587 Serpentine receptor, class z protein 67 [Caenorhabditis elegans] ref|NP_001021965.1| Serpentine Receptor, class Z family member (srz-67) [Caenorhabditis elegans] 3.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.7E-38
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.7E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500435.2 8 28-50,70-92,99-121,125-142,162-184,194-216,237-259,269-288
F56D6.5 8 28-50,70-92,99-121,125-142,162-184,194-216,237-259,269-288
GENEFINDER00000037046 9 27-49,108-130,150-172,179-201,205-222,242-264,274-296,317-339,349-368
Sequence
Target Sequence 
>C. ELEGANS:183298_AT
acatgttgctttttttgctagctattactagagcggtaatttatttttggccgtccaatg
agaaaaaaataaagaccatcctcatccatattcataaaagagttcactacttatacttcg
catttatcacaaaaacggtgatattcttttttgtagctatgtatatggaatggacagata
cgaatatatggtatattcttcccgctttcgtgtcgattcaagttttgttacacgtattga
tatttgtgtctgccattcttcacattccaataatgatcagtattcgaaagttgtcttatt
tggcgtcagctcagcaaaataatccacaaagatacattctatggcaaataattagtgttc
tgatgttcaaattgatagctttaccgtacatcatatttgggattttcgacattgattatg
ttcttgaaattatcccattcgactgttttttgttacctataatagttcaaatatcgtact
tgggatgtaacaggcgaaatgtggaaactttgctcacttcattccatttgaagaagttta
ttcaagttttgtttgaccgtcagactgcagtaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGTTGCTTTTTTTGCTAGCTAT 663 105 371 Antisense
TAAAGACCATCCTCATCCATATTCA 276 641 440 Antisense
GTTCACTACTTATACTTCGCATTTA 457 445 472 Antisense
TATATGGTATATTCTTCCCGCTTTC 364 661 555 Antisense
TCCCGCTTTCGTGTCGATTCAAGTT 247 597 570 Antisense
GATATTTGTGTCTGCCATTCTTCAC 286 427 609 Antisense
AAGTTGTCTTATTTGGCGTCAGCTC 637 155 658 Antisense
GATAGCTTTACCGTACATCATATTT 683 423 744 Antisense
TATCCCATTCGACTGTTTTTTGTTA 326 659 801 Antisense
GGAAACTTTGCTCACTTCATTCCAT 7 529 873 Antisense
GTTTGACCGTCAGACTGCAGTAAAT 457 439 921 Antisense
Sequence Source Affymetrix Proprietary Database