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[183297_at]

Description T26A8.1 /REP_DB=WormBase Gene ID /WP=CE07547 /TR=Q22806 /GB=AAA85757.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_highest_8_8 > 43      4grp_high_8_8 > 56      6grp_highest_nonorm > 73      6grp_total > 80      4grp_total > 55      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 545.4
(3)
P 		342.4
(-3)
P 		525.6
(2.4)
P 		454.7
(0.3)
P 		203
B 607.8
(3)
P 		334.6
(-3)
P 		370.1
(-2.2)
P 		426.6
(-1)
P 		273
C 541.8
(3)
P 		432.9
(-1)
P 		481.7
(0.8)
P 		378.2
(-3)
P 		164
avr 565
(3) 		370
(-3) 		459.1
(-0.3) 		419.8
(-1.5) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 515.6
(-0.8)
P 		616.9
(1.9)
P 		429.3
(-3)
P 		659.6
(3)
P 		496.9
(-1.2)
P 		484.3
(-1.6)
P 		230
B 479.3
(-2.6)
P 		548.8
(-0.1)
P 		486.7
(-2.4)
P 		635.2
(3)
P 		468.8
(-3)
P 		547.4
(-0.2)
P 		166
C 496
(-0.2)
P 		538.1
(1.1)
P 		571.1
(2.1)
P 		600.1
(3)
P 		507.6
(0.2)
P 		403.2
(-3)
P 		197
avr 497
(-2.3) 		567.9
(0.5) 		495.7
(-2.3) 		631.6
(3) 		491.1
(-2.5) 		478.3
(-3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 198.6
(3)
P 		74.3
(-2.7)
P 		137.4
(0.2)
P 		66.6
(-3)
P 		132
B 193.8
(3)
P 		82.6
(-3)
P 		85.8
(-2.8)
P 		90.9
(-2.6)
P 		111
C 179.3
(3)
P 		124.5
(0.2)
P 		167.9
(2.4)
P 		63.8
(-3)
P 		116
avr 190.6
(3) 		93.8
(-2) 		130.4
(-0.1) 		73.8
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 95
(-2.9)
P 		219.4
(3)
P 		93.5
(-3)
P 		167.3
(0.5)
P 		149.9
(-0.3)
P 		117.9
(-1.8)
P 		126
B 166.8
(0.4)
P 		182.7
(1.5)
P 		118.2
(-3)
P 		168.2
(0.5)
P 		190.4
(2)
P 		204.1
(3)
P 		86
C 183.9
(3)
P 		164.2
(1.1)
P 		145.4
(-0.7)
P 		120.7
(-3)
P 		164.2
(1.1)
P 		135
(-1.6)
P 		63
avr 148.6
(-0.5) 		188.8
(3) 		119
(-3) 		152.1
(-0.2) 		168.2
(1.2) 		152.3
(-0.1) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183297_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10344
Sequence Type Exemplar sequence
Representative Public ID T26A8.1 NCBI
Target Description T26A8.1 /REP_DB=WormBase Gene ID /WP=CE07547 /TR=Q22806 /GB=AAA85757.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069035 NCBI Caenorhabditis elegans T26A8.1 (T26A8.1) mRNA, complete cds. 11/11 None
SNAP00000003323 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8433124:8437553:1 11/11 None
GENEFINDER00000003326 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8432836:8437553:1 11/11 None
T26A8.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:8433020:8437961:1 gene:T26A8.1 11/11 A 
T26A8.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:8433101:8437959:1 gene:T26A8.1 11/11 None
T26A8.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:8433102:8437961:1 gene:T26A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8433129-8437559(+) 94.97 100.0
Public Domain and Genome References
Gene Title
Ensembl T26A8.1
Entrez Gene 177644 Entrez gene
SwissProt Q22806 EMBL-EBI
WormBase CE07547 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501436 T26A8.1 [Caenorhabditis elegans] gb|AAA85757.1| Hypothetical protein T26A8.1 [Caenorhabditis elegans] 0.0
blast CAE71534 Hypothetical protein CBG18472 [Caenorhabditis briggsae] 1.0E-121
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501436.1 12 86-108,112-129,142-164,169-187,194-216,429-451,464-486,501-523,530-547,551-573,585-604,614-631
T26A8.1.1 12 86-108,112-129,142-164,169-187,194-216,429-451,464-486,501-523,530-547,551-573,585-604,614-631
T26A8.1.3 12 86-108,112-129,142-164,169-187,194-216,429-451,464-486,501-523,530-547,551-573,585-604,614-631
T26A8.1.2 12 86-108,112-129,142-164,169-187,194-216,429-451,464-486,501-523,530-547,551-573,585-604,614-631
SNAP00000003323 12 86-108,112-129,142-164,169-187,194-216,429-451,464-486,501-523,530-547,551-573,585-604,614-631
GENEFINDER00000003326 12 140-162,166-183,196-218,223-241,248-270,483-505,518-540,555-577,584-601,605-627,639-658,668-685
Sequence
Target Sequence 
>C. ELEGANS:183297_AT
tttatcctggtttttgccggtcatcgagttggaaccatcgaaagtgtcatatcttctttt
ttgcttactgcatttggagagttaattctacttttttcatcgacttctcaatttggaaat
attacatcaatttgtggactctatgctctttggatttcactcttttttgttgtcgagttg
ttccttcaagttcgatgtaccgttcaacttgcctattttttaattgcatggatcgtcgga
cgcgccatggcttgtctttttgcactcgaaccgattttcaatggtctcgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTATCCTGGTTTTTGCCGGTCATC 626 673 1558 Antisense
GCCGGTCATCGAGTTGGAACCATCG 70 285 1573 Antisense
GTGTCATATCTTCTTTTTTGCTTAC 143 487 1601 Antisense
ATTCTACTTTTTTCATCGACTTCTC 386 11 1642 Antisense
ATTTGTGGACTCTATGCTCTTTGGA 104 19 1687 Antisense
GCTCTTTGGATTTCACTCTTTTTTG 360 299 1702 Antisense
TTTTTGTTGTCGAGTTGTTCCTTCA 556 671 1721 Antisense
TGTTCCTTCAAGTTCGATGTACCGT 174 563 1736 Antisense
ATGTACCGTTCAACTTGCCTATTTT 568 47 1752 Antisense
TAATTGCATGGATCGTCGGACGCGC 229 635 1778 Antisense
GAACCGATTTTCAATGGTCTCGAAC 171 347 1825 Antisense
Sequence Source Affymetrix Proprietary Database