[Home] | [Total List]

[183296_at]

Description D1007.9 /REP_DB=WormBase Gene ID /WP=CE09044 /TR=O01865 /GB=AAK18915.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 5.1
(-2.7)
A 		27.3
(-0.2)
A 		2.5
(-3)
A 		55.9
(3)
A 		53
B 23.2
(3)
A 		20.9
(2.3)
A 		8.4
(-1.5)
A 		3.5
(-3)
A 		20
C 21.6
(-1.4)
M 		4.4
(-3)
A 		31.7
(-0.4)
A 		67.9
(3)
A 		64
avr 16.6
(-2.5) 		17.5
(-2.3) 		14.2
(-3) 		42.4
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 10.9
(-1)
A 		10
(-1.2)
A 		29.7
(3)
A 		1.8
(-3)
A 		5.2
(-2.3)
A 		14.2
(-0.3)
A 		28
B 20
(0.7)
A 		3.2
(-2.8)
A 		28.2
(2.5)
A 		30.8
(3)
A 		2.1
(-3)
A 		2.2
(-3)
A 		29
C 1.5
(-3)
A 		4.8
(-2.7)
A 		59.5
(3)
A 		45.5
(1.6)
A 		36.6
(0.6)
A 		27.5
(-0.3)
A 		58
avr 10.8
(-2.1) 		6
(-3) 		39.1
(3) 		26
(0.6) 		14.6
(-1.4) 		14.6
(-1.4) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.8
(-2.1)
A 		5.9
(1.2)
A 		0.7
(-3)
A 		8.2
(3)
A 		8
B 7.4
(3)
A 		5.2
(1)
A 		2
(-1.8)
A 		0.7
(-3)
A 		7
C 7.1
(0.4)
M 		1.3
(-3)
A 		11
(2.7)
A 		11.5
(3)
A 		10
avr 5.4
(-0.1) 		4.1
(-3) 		4.6
(-1.9) 		6.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2
(-1.5)
A 		3.6
(0.1)
A 		6.5
(3)
A 		0.5
(-3)
A 		1.6
(-1.9)
A 		3.4
(-0.1)
A 		6
B 7
(2)
A 		1.1
(-2.8)
A 		6.8
(1.9)
A 		8.2
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		7
C 0.6
(-3)
A 		1.5
(-2.6)
A 		15.1
(3)
A 		9.1
(0.5)
A 		11.9
(1.7)
A 		9.2
(0.6)
A 		15
avr 3.2
(-2.1) 		2.1
(-3) 		9.5
(3) 		5.9
(0.1) 		4.8
(-0.8) 		4.5
(-1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2321
Sequence Type Exemplar sequence
Representative Public ID D1007.9 NCBI
Target Description D1007.9 /REP_DB=WormBase Gene ID /WP=CE09044 /TR=O01865 /GB=AAK18915.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059001(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059001 NCBI Caenorhabditis elegans D1007.9 (D1007.9) mRNA, complete cds. 11/11 None
D1007.9 ENSEMBL cdna:known chromosome:CEL140:I:4590431:4591588:1 gene:D1007.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4590430-4591588(+) 95.24 100.0
Public Domain and Genome References
Gene Title
Ensembl D1007.9
Entrez Gene 183888 Entrez gene
SwissProt O01865 EMBL-EBI
WormBase CE09044 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18915 Hypothetical protein D1007.9 [Caenorhabditis elegans] ref|NP_491402.1| D1007.9 [Caenorhabditis elegans] 7.0E-84
Sequence
Target Sequence 
>C. ELEGANS:183296_AT
aaaattcgaaattgtgccggatatttatagaaaagacaaatgggatctcattttggggtg
ggcgagaccatgtttgctcagattttgaaataggaattttggagaagggtttttgggctg
ctcttcgtgaaaacacaaatgttcaacaaaaatttgaaattacagaccgcaaaatgcaca
attttatgatttttacggccgagaaattgaaaaaaaaaaactgggccacaacaagggact
gcaggcaatttctggccgagttttgtgtttatctaggaaataatatttttgaaattttga
agaaaaactcggccaccgaggttctttcgagtatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATTCGAAATTGTGCCGGATATT 424 131 77 Antisense
TGGGATCTCATTTTGGGGTGGGCGA 534 549 117 Antisense
GGGCGAGACCATGTTTGCTCAGATT 315 493 136 Antisense
GGAGAAGGGTTTTTGGGCTGCTCTT 677 517 177 Antisense
TGGGCTGCTCTTCGTGAAAACACAA 628 553 190 Antisense
GAAATTACAGACCGCAAAATGCACA 353 361 232 Antisense
CAATTTTATGATTTTTACGGCCGAG 232 181 255 Antisense
AACTGGGCCACAACAAGGGACTGCA 23 143 295 Antisense
GGGACTGCAGGCAATTTCTGGCCGA 438 495 311 Antisense
TTCTGGCCGAGTTTTGTGTTTATCT 436 693 326 Antisense
GCCACCGAGGTTCTTTCGAGTATGG 237 277 388 Antisense
Sequence Source Affymetrix Proprietary Database