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[183295_at]

Description C09B8.5 /REP_DB=WormBase Gene ID /WP=CE02465 /TR=Q17847 /GB=AAA68803.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 10.9
(-2.2)
A 		9.7
(-2.3)
A 		0.9
(-3)
A 		74.9
(3)
A 		74
B 27.8
(-0.2)
P 		10.9
(-2.2)
A 		4.1
(-3)
A 		54.1
(3)
P 		50
C 24.8
(-0.4)
P 		7.4
(-2.3)
A 		1.6
(-3)
A 		54.8
(3)
A 		53
avr 21.2
(-1.1) 		9.3
(-2.3) 		2.2
(-3) 		61.3
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 56.8
(3)
A 		2.3
(-3)
A 		14.5
(-1.7)
A 		18
(-1.3)
A 		28
(-0.2)
A 		47.7
(2)
P 		55
B 27.9
(-0.2)
P 		23.2
(-1.6)
M 		19.9
(-2.6)
A 		18.6
(-3)
A 		29.6
(0.3)
P 		38.6
(3)
P 		20
C 21.8
(-1.3)
M 		9.9
(-3)
A 		19.1
(-1.7)
A 		25.3
(-0.8)
A 		31.6
(0.1)
A 		52.1
(3)
P 		42
avr 35.5
(1.1) 		11.8
(-3) 		17.8
(-2) 		20.6
(-1.5) 		29.7
(0.1) 		46.1
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4
(-0.9)
A 		2.1
(-1.9)
A 		0.2
(-3)
A 		11
(3)
A 		11
B 8.9
(1.5)
P 		2.7
(-2)
A 		0.9
(-3)
A 		11.5
(3)
P 		11
C 8.2
(2.3)
P 		2.1
(-2)
A 		0.6
(-3)
A 		9.2
(3)
A 		9
avr 7
(0.8) 		2.3
(-2) 		0.6
(-3) 		10.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.5
(2.4)
A 		0.8
(-3)
A 		3.2
(-1.7)
A 		4.6
(-0.9)
A 		8.4
(1.2)
A 		11.6
(3)
P 		11
B 9.7
(0.1)
P 		7.7
(-1.2)
M 		4.8
(-3)
A 		4.9
(-2.9)
A 		12
(1.5)
P 		14.4
(3)
P 		10
C 8.1
(-0.9)
M 		3
(-3)
A 		4.9
(-2.2)
A 		5.1
(-2.1)
A 		10.2
(-0)
A 		17.5
(3)
P 		15
avr 9.4
(0.1) 		3.8
(-3) 		4.3
(-2.7) 		4.9
(-2.4) 		10.2
(0.6) 		14.5
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16877
Sequence Type Exemplar sequence
Representative Public ID C09B8.5 NCBI
Target Description C09B8.5 /REP_DB=WormBase Gene ID /WP=CE02465 /TR=Q17847 /GB=AAA68803.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076606 NCBI Caenorhabditis elegans C09B8.5 (C09B8.5) mRNA, complete cds. 11/11 None
SNAP00000035903 ENSEMBL cdna:SNAP chromosome:CEL140:X:6021008:6022397:-1 11/11 None
GENEFINDER00000035913 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6021008:6022397:-1 11/11 None
C09B8.5 ENSEMBL cdna:known chromosome:CEL140:X:6021008:6022415:-1 gene:C09B8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6021007-6022415(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09B8.5
Entrez Gene 182440 Entrez gene
SwissProt Q17847 EMBL-EBI
WormBase CE02465 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68803 Hypothetical protein C09B8.5 [Caenorhabditis elegans] ref|NP_509007.1| C09B8.5 [Caenorhabditis elegans] 0.0
blast CAE66016 Hypothetical protein CBG11209 [Caenorhabditis briggsae] 2.0E-53
Sequence
Target Sequence 
>C. ELEGANS:183295_AT
tttcccgaaaaatgtggtatctctgaaaataatcacagcacgaggaatggaaaactcatt
gagattactgaagaatgtgcactttaaacgagtaattgtggataaccaatgtgatacttc
aacaatttttgaaattccaatgatctatgaagcaaagtatttaatgattgatacagtcga
catgattaatgaagcacttttagatatgccattggtttcagctgcaaagataaatcaaaa
aatgaatgcaaactcaactttcattgacttcgttcaaaaattaattgattctgaaaattt
gtgcattggattaaaatatacagcaacttcacatgatcacaattttgttttaagaaatct
caaatcggagttaagagtacgaatcaatgttagaaaaacaaattggaaaggaagaaattg
tctgacaatcgacatggaaggcgaaaaggaattggtcatttcttggtacaaaacgggaac
agtattctttccaaaacatcatgttactgcacaagttctcaataaaggatcttcaaagaa
tcgagcttctggagttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCGAAAAATGTGGTATCTCTG 144 669 393 Antisense
GTGGATAACCAATGTGATACTTCAA 327 467 490 Antisense
GATTGATACAGTCGACATGATTAAT 322 435 558 Antisense
GAAGCACTTTTAGATATGCCATTGG 264 341 583 Antisense
ATGCCATTGGTTTCAGCTGCAAAGA 393 41 598 Antisense
AACTCAACTTTCATTGACTTCGTTC 126 135 643 Antisense
ATATACAGCAACTTCACATGATCAC 549 19 708 Antisense
GTCTGACAATCGACATGGAAGGCGA 617 471 812 Antisense
ATTGGTCATTTCTTGGTACAAAACG 268 3 843 Antisense
ATGTTACTGCACAAGTTCTCAATAA 558 47 893 Antisense
CAAAGAATCGAGCTTCTGGAGTTAT 479 187 926 Antisense
Sequence Source Affymetrix Proprietary Database