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[183293_at]

Description M03C11.3 /REP_DB=WormBase Gene ID /WP=CE03494 /TR=Q21488 /GB=CAA88958.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 62.8
(0.1)
P 		29.4
(-1.8)
A 		8.1
(-3)
A 		113.1
(3)
A 		105
B 59.6
(3)
A 		35.9
(-3)
A 		58.5
(2.7)
A 		37
(-2.7)
A 		24
C 68.8
(-1.1)
P 		81.4
(-0.5)
A 		23.9
(-3)
A 		164
(3)
P 		140
avr 63.7
(-0.3) 		48.9
(-1.5) 		30.2
(-3) 		104.7
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 38.3
(-0.7)
A 		6.8
(-3)
A 		88.7
(3)
P 		55.4
(0.6)
A 		32.7
(-1.1)
A 		53.6
(0.4)
A 		82
B 45
(0.8)
A 		20.5
(-3)
A 		22.6
(-2.7)
A 		59
(3)
A 		52
(1.9)
A 		50.6
(1.7)
A 		39
C 18
(-3)
A 		63.2
(3)
A 		54.8
(1.9)
A 		42
(0.2)
A 		28.9
(-1.6)
A 		28.3
(-1.6)
A 		45
avr 33.8
(-2.1) 		30.2
(-3) 		55.4
(3) 		52.1
(2.2) 		37.9
(-1.2) 		44.2
(0.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 22.9
(3)
P 		6.4
(-1.8)
A 		2.1
(-3)
A 		16.6
(1.2)
A 		21
B 19
(3)
A 		8.9
(-2.5)
A 		13.6
(0.1)
A 		7.9
(-3)
A 		11
C 22.8
(1.5)
P 		23.4
(1.7)
A 		8.3
(-3)
A 		27.7
(3)
P 		19
avr 21.6
(3) 		12.9
(-0.8) 		8
(-3) 		17.4
(1.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.1
(-1.3)
A 		2.4
(-3)
A 		19.3
(3)
P 		14.1
(1.2)
A 		9.9
(-0.3)
A 		13
(0.8)
A 		17
B 15.7
(0.9)
A 		6.8
(-2.5)
A 		5.5
(-3)
A 		15.6
(0.9)
A 		21.1
(3)
A 		18.9
(2.2)
A 		16
C 6.7
(-3)
A 		19.3
(3)
A 		14
(0.5)
A 		8.4
(-2.2)
A 		9.3
(-1.8)
A 		9.5
(-1.7)
A 		13
avr 9.8
(-2.6) 		9.5
(-3) 		12.9
(1.7) 		12.7
(1.5) 		13.4
(2.4) 		13.8
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6871
Sequence Type Exemplar sequence
Representative Public ID M03C11.3 NCBI
Target Description M03C11.3 /REP_DB=WormBase Gene ID /WP=CE03494 /TR=Q21488 /GB=CAA88958.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066896(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066896 NCBI Caenorhabditis elegans M03C11.3 (M03C11.3) mRNA, complete cds. 11/11 None
SNAP00000000516 ENSEMBL cdna:SNAP chromosome:CEL140:III:10400154:10414585:1 11/11 None
GENEFINDER00000000553 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10408146:10414585:1 11/11 None
M03C11.3 ENSEMBL cdna:known chromosome:CEL140:III:10404955:10414585:1 gene:M03C11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10408145-10414581(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03C11.3
Entrez Gene 187419 Entrez gene
SwissProt Q21488 EMBL-EBI
WormBase CE03494 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88958 Hypothetical protein M03C11.3 [Caenorhabditis elegans] ref|NP_499297.1| M03C11.3 [Caenorhabditis elegans] 0.0
blast CAE71474 Hypothetical protein CBG18392 [Caenorhabditis briggsae] 1.0E-177
blast CAE71474 Hypothetical protein CBG18392 [Caenorhabditis briggsae] 1.0E-160
Sequence
Target Sequence 
>C. ELEGANS:183293_AT
ccacgtggcagaccagcaactgcaaaaaggaaaccatcgaaaatgtctgtggcagcaaaa
ctcaataatggaatctatctcgattatttatttgaagattttatgaatgaggatatttgt
gtgtcacaattgcctacgttggtgtcttatcagagtattcacgtacccacctaccgtacc
attcccgacgactattggcaagataaagaaccaacggacggaattgttaagcaggaagaa
gctgaagagaaagaaaaatcatcagatgatcttctgattactgtagccaagaaacatcat
aagctgatgcatgccgaacgggaaaggattaagagagaaacggacaaacgaataagaaat
cgtcaaccagctcaaaaatcggcggccgccacaccagcacacagctcatcattcgcagta
ccaaatgccggagaagttgaagacgacgaagacggcaatcaatatccaccatttgatatg
aatcaatttgaattggatgctgcagttgtgtcaaggcgtcgttttgcttctgtcgagaaa
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGTGGCAGACCAGCAACTGCAA 5 275 1897 Antisense
GTGTGTCACAATTGCCTACGTTGGT 331 487 2015 Antisense
GCCTACGTTGGTGTCTTATCAGAGT 113 283 2028 Antisense
TATCAGAGTATTCACGTACCCACCT 442 659 2044 Antisense
TACCATTCCCGACGACTATTGGCAA 140 649 2073 Antisense
TAAGCTGATGCATGCCGAACGGGAA 263 629 2196 Antisense
CAACCAGCTCAAAAATCGGCGGCCG 27 187 2260 Antisense
AGCTCATCATTCGCAGTACCAAATG 242 79 2299 Antisense
AAGACGGCAATCAATATCCACCATT 466 153 2345 Antisense
GATGCTGCAGTTGTGTCAAGGCGTC 310 413 2392 Antisense
GTCGTTTTGCTTCTGTCGAGAAACC 597 471 2414 Antisense
Sequence Source Affymetrix Proprietary Database