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[183292_at]

Description W09D10.5 /REP_DB=WormBase Gene ID /WP=CE16566 /TR=O18184 /GB=CAB07861.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 71      6grp_total > 71      4grp_total > 48      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 184.9
(-3)
P 		275.9
(0.6)
P 		334.5
(3)
P 		231.5
(-1.1)
P 		150
B 191.2
(-3)
P 		304.1
(1.9)
P 		328.9
(3)
P 		199.7
(-2.6)
P 		138
C 158.9
(-3)
P 		386.6
(3)
P 		370.1
(2.6)
P 		233.3
(-1)
P 		228
avr 178.3
(-3) 		322.2
(2.2) 		344.5
(3) 		221.5
(-1.4) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 244.7
(-1.6)
P 		232.3
(-1.8)
P 		294.3
(-0.6)
P 		473.4
(3)
P 		346.7
(0.5)
P 		172.7
(-3)
P 		301
B 297.1
(-0.9)
P 		268.6
(-1.4)
P 		273.9
(-1.3)
P 		513.3
(3)
P 		281.4
(-1.1)
P 		176.4
(-3)
P 		337
C 254.4
(-2.2)
P 		278.8
(-1.6)
P 		383.2
(1.2)
P 		449
(3)
P 		302.4
(-0.9)
P 		225.7
(-3)
P 		223
avr 265.4
(-1.5) 		259.9
(-1.6) 		317.1
(-0.4) 		478.6
(3) 		310.2
(-0.5) 		191.6
(-3) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 67.3
(0.7)
P 		59.9
(-0.1)
P 		87.4
(3)
P 		33.9
(-3)
P 		54
B 61
(0.3)
P 		75.1
(2.8)
P 		76.2
(3)
P 		42.6
(-3)
P 		34
C 52.6
(-2.1)
P 		111.1
(1.8)
P 		129
(3)
P 		39.3
(-3)
P 		90
avr 60.3
(-0.8) 		82
(1.4) 		97.5
(3) 		38.6
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 45.1
(-2.8)
P 		82.6
(0.1)
P 		64.1
(-1.3)
P 		120.1
(3)
P 		104.6
(1.8)
P 		42
(-3)
P 		78
B 103.4
(0.2)
P 		89.4
(-1)
P 		66.5
(-2.9)
P 		135.9
(3)
P 		114.3
(1.2)
P 		65.8
(-3)
P 		70
C 94.3
(2.1)
P 		85.1
(-0.4)
P 		97.5
(2.9)
P 		90.3
(1)
P 		97.8
(3)
P 		75.6
(-3)
P 		22
avr 80.9
(-0.8) 		85.7
(-0.3) 		76
(-1.4) 		115.4
(3) 		105.6
(1.9) 		61.1
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7171
Sequence Type Exemplar sequence
Representative Public ID W09D10.5 NCBI
Target Description W09D10.5 /REP_DB=WormBase Gene ID /WP=CE16566 /TR=O18184 /GB=CAB07861.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066960(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066960 NCBI Caenorhabditis elegans W09D10.5 (W09D10.5) mRNA, complete cds. 10/11 None
SNAP00000014510 ENSEMBL cdna:SNAP chromosome:CEL140:III:10707624:10710557:-1 11/11 None
GENEFINDER00000014535 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10708490:10710557:-1 10/11 None
W09D10.5 ENSEMBL cdna:known chromosome:CEL140:III:10708490:10711274:-1 gene:W09D10.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10708516-10710553(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09D10.5
Entrez Gene 176496 Entrez gene
SwissProt O18184 EMBL-EBI
WormBase CE37798 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07861 Hypothetical protein W09D10.5 [Caenorhabditis elegans] ref|NP_499361.3| W09D10.5 [Caenorhabditis elegans] 0.0
blast CAB07861 Hypothetical protein W09D10.5 [Caenorhabditis elegans] ref|NP_499361.3| W09D10.5 [Caenorhabditis elegans] 1.0E-178
blast CAB07861 Hypothetical protein W09D10.5 [Caenorhabditis elegans] ref|NP_499361.3| W09D10.5 [Caenorhabditis elegans] 1.0E-172
blast CAE71414 Hypothetical protein CBG18324 [Caenorhabditis briggsae] 1.0E-147
blast CAE71414 Hypothetical protein CBG18324 [Caenorhabditis briggsae] 1.0E-141
blast CAE71414 Hypothetical protein CBG18324 [Caenorhabditis briggsae] 1.0E-140
blast CAE71461 Hypothetical protein CBG18379 [Caenorhabditis briggsae] 7.0E-97
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499361.3 1 17-39
W09D10.5 1 17-39
SNAP00000014510 1 22-44
GENEFINDER00000014535 1 22-44
Sequence
Target Sequence 
>C. ELEGANS:183292_AT
gtaccacgtggattccagccttaaccatttctactggacatattatttatatgcaatgga
attctcgtcaaaagtcccggctcaatggacatttttgggcgatgatcagacttatttgat
agttccaaatcttcgaaatactctgagaaattttgattctgaaaaaccagttgttcttgg
aaaagtgaaggatactagcacattattctcttggctcttcccgctgagcagcttcaagaa
gatttccgttcgtggtggagttgtgctatcaaatccagcaattgataagctttctgcttg
caaaggatttttcttctcgcgagcctcggatttcgctctctacgactgcagcgagaagta
cggtgtccagatagctgatccatttgatgaagatgctctccgactattcaacgatcttcc
accaaaacaaataattgcgccagactcgaaattgttccgttcaagtcccacaaaagccgg
aaaatgttccgaccacgcgatctcgttcggccaattatccgaaaaggatatgcgagttct
tcaattcggaatgtcgctgaaagtattcggacgcggaggtttgtacccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCACGTGGATTCCAGCCTTAAC 700 457 462 Antisense
CAGCCTTAACCATTTCTACTGGACA 397 201 477 Antisense
GGAATTCTCGTCAAAAGTCCCGGCT 639 531 519 Antisense
TAGCACATTATTCTCTTGGCTCTTC 596 651 657 Antisense
GCAAAGGATTTTTCTTCTCGCGAGC 128 319 761 Antisense
TTTCGCTCTCTACGACTGCAGCGAG 122 669 792 Antisense
GCAGCGAGAAGTACGGTGTCCAGAT 97 315 809 Antisense
TGCTCTCCGACTATTCAACGATCTT 272 581 855 Antisense
GCGCCAGACTCGAAATTGTTCCGTT 82 287 898 Antisense
CGATCTCGTTCGGCCAATTATCCGA 558 247 959 Antisense
TTCGGACGCGGAGGTTTGTACCCAT 172 693 1027 Antisense
Sequence Source Affymetrix Proprietary Database