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[183291_at]

Description F56C9.3 /REP_DB=WormBase Gene ID /WP=CE01322 /TR=Q20864 /GB=AAK18959.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 26.9
(-3)
A 		52.8
(-0.6)
A 		43.5
(-1.4)
A 		90.7
(3)
M 		64
B 40.2
(-0.7)
A 		72.7
(3)
A 		19.5
(-3)
A 		45.3
(-0.1)
P 		53
C 61.1
(-0.1)
A 		43.2
(-3)
A 		53.1
(-1.4)
P 		80.7
(3)
P 		38
avr 42.7
(-2.3) 		56.2
(0.1) 		38.7
(-3) 		72.2
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 33.5
(-3)
A 		41.2
(-2.9)
A 		64.9
(-2.5)
P 		120.8
(-1.6)
P 		261.4
(0.7)
P 		406.6
(3)
P 		373
B 15.3
(-3)
A 		32.7
(-2.8)
A 		72.7
(-2.3)
P 		153.8
(-1.4)
P 		252.2
(-0.3)
P 		533
(3)
P 		518
C 55
(-2.8)
A 		44.1
(-2.9)
A 		39
(-3)
A 		126.5
(-1.9)
P 		243.1
(-0.4)
P 		507.9
(3)
P 		469
avr 34.6
(-3) 		39.3
(-2.9) 		58.9
(-2.7) 		133.7
(-1.7) 		252.2
(-0.1) 		482.5
(3) 		448
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.8
(-3)
A 		11.5
(-0.1)
A 		11.4
(-0.3)
A 		13.3
(3)
M 		4
B 12.8
(0.7)
A 		18
(3)
A 		4.5
(-3)
A 		9.6
(-0.7)
P 		14
C 20.2
(3)
A 		12.4
(-3)
A 		18.5
(1.7)
P 		13.6
(-2.1)
P 		8
avr 14.3
(3) 		14
(2.4) 		11.5
(-3) 		12.2
(-1.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 6.2
(-3)
A 		14.6
(-2.5)
A 		14.1
(-2.5)
P 		30.6
(-1.4)
P 		78.9
(1.7)
P 		99
(3)
P 		93
B 5.3
(-3)
A 		10.9
(-2.8)
A 		17.6
(-2.6)
P 		40.7
(-1.9)
P 		102.5
(0)
P 		198.7
(3)
P 		193
C 20.4
(-2.6)
A 		13.4
(-2.9)
A 		9.9
(-3)
A 		25.4
(-2.4)
P 		78.7
(-0.4)
P 		170
(3)
P 		160
avr 10.6
(-3) 		13
(-2.9) 		13.9
(-2.9) 		32.2
(-2.1) 		86.7
(0.1) 		155.9
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7246
Sequence Type Exemplar sequence
Representative Public ID F56C9.3 NCBI
Target Description F56C9.3 /REP_DB=WormBase Gene ID /WP=CE01322 /TR=Q20864 /GB=AAK18959.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066210 NCBI Caenorhabditis elegans F56C9.3 (F56C9.3) mRNA, complete cds. 11/11 None
SNAP00000032851 ENSEMBL cdna:SNAP chromosome:CEL140:III:7311250:7312836:1 11/11 None
GENEFINDER00000032864 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7311250:7312836:1 11/11 None
F56C9.3 ENSEMBL cdna:known chromosome:CEL140:III:7311219:7313031:1 gene:F56C9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7311247-7312834(+) 97.86 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C9.3
Entrez Gene 176036 Entrez gene
SwissProt Q20864 EMBL-EBI
WormBase CE29406 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262751_AT cation efflux family protein at
ATGENOME1:17166_AT cation efflux family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8324 cation transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18959 Hypothetical protein F56C9.3 [Caenorhabditis elegans] ref|NP_498611.1| F56C9.3 [Caenorhabditis elegans] 0.0
blast T16470 hypothetical protein F56C9.3 - Caenorhabditis elegans 0.0
blast CAE57623 Hypothetical protein CBG00606 [Caenorhabditis briggsae] emb|CAE69298.1| Hypothetical protein CBG15353 [Caenorhabditis briggsae] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR002524 EMBL-EBI Cation efflux protein 8.4E-32
Pfam IPR002524 EMBL-EBI Cation efflux protein 2.4E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498611.1 6 136-158,162-184,205-223,243-265,285-302,322-341
F56C9.3 6 136-158,162-184,205-223,243-265,285-302,322-341
SNAP00000032851 6 136-158,162-184,205-223,243-265,285-302,322-341
GENEFINDER00000032864 6 136-158,162-184,205-223,243-265,285-302,322-341
Sequence
Target Sequence 
>C. ELEGANS:183291_AT
gtgagctggccaactattgcaatcatgggatcaacgattgccgtaaagctaactcttttc
attatttgtcagaaatacaaatccaattcttctatcaaagttctctctctggatcatcgt
aatgattgcatttcaaattcaatggctctggcatgtgcatggctcgctttttattatact
gtgaaagacggtgacgagaaatcaggagccgtggtttttgaaaagcagttcgatttatat
tatttggatcctgctggcgccatacttgtatctgtatacatcctctacacgtggatccga
accggatacgcgcatttcgtcatgctcagtggaaagtcagctcatccagagttgatcaat
cggattgttcatcagtgtatcgagcatgatccacggattacacatattgacaccgtttat
gtatatcactatggaaccaaatttcttgtcgaggttcacatcgttcttgaccaaaacatg
agcctcaaagtgacccacgacatagccgaaagccttcaaacaggaatcgaatcgcttccg
gaaatcgagagagcctttgttcattgtgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGCTGGCCAACTATTGCAATCA 501 481 706 Antisense
CTTCTATCAAAGTTCTCTCTCTGGA 117 221 794 Antisense
CAATGGCTCTGGCATGTGCATGGCT 409 181 845 Antisense
GCATGGCTCGCTTTTTATTATACTG 191 311 862 Antisense
ATATTATTTGGATCCTGCTGGCGCC 74 19 942 Antisense
ATACATCCTCTACACGTGGATCCGA 143 23 981 Antisense
ATACGCGCATTTCGTCATGCTCAGT 528 23 1011 Antisense
GTATCGAGCATGATCCACGGATTAC 81 455 1082 Antisense
GTCGAGGTTCACATCGTTCTTGACC 249 473 1153 Antisense
AACATGAGCCTCAAAGTGACCCACG 538 133 1180 Antisense
GAGAGAGCCTTTGTTCATTGTGACT 388 395 1252 Antisense
Sequence Source Affymetrix Proprietary Database