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[183290_at]

Description R07E5.11 /REP_DB=WormBase Gene ID /WP=CE00669 /TR=Q21822 /GB=CAA83618.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 85      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 91      6grp_total > 76      4grp_total > 09      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 116.6
(-3)
P 		198.2
(1.6)
P 		150.6
(-1.1)
P 		223.6
(3)
P 		107
B 121.9
(-3)
P 		150.5
(-2.2)
P 		137.1
(-2.6)
P 		327.4
(3)
P 		206
C 129.6
(-2.2)
P 		106.4
(-3)
P 		173.5
(-0.7)
P 		281.1
(3)
P 		175
avr 122.7
(-3) 		151.7
(-1.9) 		153.7
(-1.8) 		277.4
(3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 145.7
(-3)
P 		205.6
(-0.4)
P 		204.4
(-0.5)
P 		284.5
(3)
P 		214.3
(-0)
P 		271.4
(2.4)
P 		139
B 157.7
(-3)
P 		210.4
(-1.3)
P 		240.7
(-0.3)
P 		164.7
(-2.8)
P 		289.9
(1.3)
P 		341
(3)
P 		183
C 139.9
(-3)
P 		228.1
(-1.2)
P 		247.3
(-0.8)
P 		238
(-1)
P 		248.6
(-0.8)
P 		439.4
(3)
P 		300
avr 147.8
(-3) 		214.7
(-1) 		230.8
(-0.5) 		229.1
(-0.6) 		250.9
(0.1) 		350.6
(3) 		203
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 42.5
(2.7)
P 		43
(3)
P 		39.4
(0.9)
P 		32.7
(-3)
P 		10
B 38.9
(-1.9)
P 		37.2
(-2.1)
P 		31.8
(-3)
P 		69.8
(3)
P 		38
C 42.9
(-0.5)
P 		30.6
(-3)
P 		60.5
(3)
P 		47.4
(0.4)
P 		30
avr 41.4
(-0.9) 		36.9
(-3) 		43.9
(0.2) 		50
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 26.9
(-3)
P 		73.1
(3)
P 		44.5
(-0.7)
P 		72.2
(2.9)
P 		64.7
(1.9)
P 		66.1
(2.1)
P 		46
B 54.9
(-2.2)
P 		70
(-1.1)
P 		58.4
(-1.9)
P 		43.6
(-3)
P 		117.8
(2.3)
P 		127.1
(3)
P 		84
C 51.9
(-2.8)
P 		69.6
(-1.7)
P 		63
(-2.1)
P 		47.9
(-3)
P 		80.4
(-1)
P 		147.1
(3)
P 		99
avr 44.6
(-3) 		70.9
(-0.7) 		55.3
(-2.1) 		54.6
(-2.1) 		87.6
(0.7) 		113.4
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7500
Sequence Type Exemplar sequence
Representative Public ID R07E5.11 NCBI
Target Description R07E5.11 /REP_DB=WormBase Gene ID /WP=CE00669 /TR=Q21822 /GB=CAA83618.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065494(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065494 NCBI Caenorhabditis elegans R07E5.11 (R07E5.11) mRNA, complete cds. 11/11 None
SNAP00000012853 ENSEMBL cdna:SNAP chromosome:CEL140:III:4414809:4418021:-1 11/11 None
GENEFINDER00000012859 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4414809:4415195:-1 11/11 None
R07E5.11 ENSEMBL cdna:known chromosome:CEL140:III:4414809:4415195:-1 gene:R07E5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4414808-4415195(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07E5.11
Entrez Gene 175576 Entrez gene
SwissProt Q21822 EMBL-EBI
WormBase CE00669 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83630 Hypothetical protein R07E5.10 [Caenorhabditis elegans] ref|NP_497896.1| R07E5.10 [Caenorhabditis elegans] 0.0
blast S43603 RNA binding protein homolog R07E5.12 - Caenorhabditis elegans 3.0E-52
blast EAA11866 ENSANGP00000007243 [Anopheles gambiae str. PEST] ref|XP_315591.2| ENSANGP00000007243 [Anopheles gambiae str. PEST] 2.0E-49
blast CAA83618 Hypothetical protein R07E5.11 [Caenorhabditis elegans] ref|NP_497895.1| R07E5.11 [Caenorhabditis elegans] 2.0E-38
blast CAE71206 Hypothetical protein CBG18068 [Caenorhabditis briggsae] 6.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 1.7E-20
Pfam IPR007320 EMBL-EBI Programmed cell death protein 2, C-terminal 1.5E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000012853 2 31-53,66-88
Sequence
Target Sequence 
>C. ELEGANS:183290_AT
agatgctcaagcaggtgaaccagaagaagaagaagtcgatgatgagctgtcaagtacaga
cttgtacgaagattctatggctgaagtgacattgaatgagacacgcggaggacatgactc
tgatccattcgatcgaagtggtgaatatgatgaagacgtcgatcttgccgcacctcctcc
aatcactccggatattccagaaatccctgcagatgtgctgatttcgctgaaaaatcgtgc
agaaggaactgccatcgatctcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGCTCAAGCAGGTGAACCAGAA 483 67 21 Antisense
GAAGTCGATGATGAGCTGTCAAGTA 396 331 52 Antisense
GACTTGTACGAAGATTCTATGGCTG 338 371 79 Antisense
GATTCTATGGCTGAAGTGACATTGA 394 429 91 Antisense
GAGACACGCGGAGGACATGACTCTG 301 393 118 Antisense
GGACATGACTCTGATCCATTCGATC 672 525 130 Antisense
GACTCTGATCCATTCGATCGAAGTG 85 375 136 Antisense
CTCCAATCACTCCGGATATTCCAGA 185 237 197 Antisense
GATATTCCAGAAATCCCTGCAGATG 507 427 211 Antisense
CCCTGCAGATGTGCTGATTTCGCTG 569 259 225 Antisense
GAAGGAACTGCCATCGATCTCAAAA 682 333 262 Antisense
Sequence Source Affymetrix Proprietary Database