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[183289_at]

Description T07H8.2 /REP_DB=WormBase Gene ID /WP=CE18223 /TR=O61896 /GB=AAC17677.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 04      6grp_cgc > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 56.2
(-1.7)
A 		43.1
(-3)
A 		75.5
(0.2)
A 		104.8
(3)
A 		62
B 34.4
(2.4)
A 		16.9
(-3)
A 		36.4
(3)
A 		33.5
(2.1)
A 		20
C 47.4
(-1.1)
A 		39.3
(-1.5)
A 		7.9
(-3)
A 		132.6
(3)
P 		125
avr 46
(-1.6) 		33.1
(-3) 		39.9
(-2.3) 		90.3
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 49.5
(1.8)
A 		17.6
(-1.7)
A 		61
(3)
P 		5.5
(-3)
A 		12.4
(-2.3)
A 		49.3
(1.7)
A 		56
B 29.4
(0.1)
A 		22.6
(-0.9)
A 		26.6
(-0.3)
A 		8.9
(-3)
A 		48.1
(3)
A 		39.8
(1.7)
A 		39
C 30.2
(-1.4)
A 		76.2
(3)
P 		41.8
(-0.3)
A 		40.4
(-0.4)
A 		17
(-2.7)
A 		13.4
(-3)
A 		63
avr 36.4
(1.4) 		38.8
(2) 		43.1
(3) 		18.3
(-3) 		25.8
(-1.2) 		34.2
(0.8) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.5
(3)
A 		9.4
(-3)
A 		19.7
(2.6)
A 		15.3
(0.2)
A 		11
B 11
(3)
A 		4.2
(-3)
A 		8.4
(0.7)
A 		7.1
(-0.4)
A 		7
C 15.7
(1)
A 		11.3
(-0.4)
A 		2.7
(-3)
A 		22.4
(3)
P 		20
avr 15.7
(3) 		8.3
(-3) 		10.3
(-1.4) 		14.9
(2.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.1
(0.9)
A 		6.3
(-0.5)
A 		13.3
(3)
P 		1.4
(-3)
A 		3.7
(-1.8)
A 		12
(2.3)
A 		12
B 10.2
(-0.3)
A 		7.5
(-1.2)
A 		6.5
(-1.6)
A 		2.4
(-3)
A 		19.6
(3)
A 		14.8
(1.3)
A 		17
C 11.2
(-0.9)
A 		23.2
(3)
P 		10.6
(-1)
A 		8.1
(-1.8)
A 		5.5
(-2.7)
A 		4.5
(-3)
A 		19
avr 10.2
(1.5) 		12.3
(3) 		10.1
(1.4) 		4
(-3) 		9.6
(1) 		10.4
(1.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183289_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11280
Sequence Type Exemplar sequence
Representative Public ID T07H8.2 NCBI
Target Description T07H8.2 /REP_DB=WormBase Gene ID /WP=CE18223 /TR=O61896 /GB=AAC17677.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028944(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028944 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-138) (srx-138) mRNA, complete cds. 10/11 None
T07H8.2 ENSEMBL cdna:known chromosome:CEL140:V:6976116:6977399:1 gene:T07H8.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6976116-6977426(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07H8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024115 Serpentine Receptor, class X family member (srx-138) [Caenorhabditis elegans] gb|AAC17677.2| Serpentine receptor, class x protein 138, isoform a [Caenorhabditis elegans] 4.0E-63
blast CAE72115 Hypothetical protein CBG19209 [Caenorhabditis briggsae] emb|CAE71976.1| Hypothetical protein CBG19050 [Caenorhabditis briggsae] 1.0E-33
blast CAE63949 Hypothetical protein CBG08531 [Caenorhabditis briggsae] 4.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024115.1 4 7-29,39-61,82-104,114-131
T07H8.2 4 7-29,39-61,82-104,114-131
Sequence
Target Sequence 
>C. ELEGANS:183289_AT
tatgatgttccatctcttcgaagctcttttggcgtactctcagcccatggatcgttttca
actgcagtttattgcactttcgccttgatttgtgtgtcaccaaccatgatgttggaaaac
caattcctcacaaagtattcatatgtatcaggatattttctttatttattttatgatcta
gcaacggaaactcatttattgatatgtttaaatcgattctttgctctatggtttcctcac
aaatattcaaaactattcaatattaagcatactttaattttcatagttacgagcacatta
aatacaatgtcatcgcaacggaaagcaaaagctgagaggaacttcttacaacaatgtttc
tatcaagaaagtgcgtatgcttttgcgctgttgacatactttcttctgccaggagtcatt
gagagtgatttgatgcgttttttgattttattgcttccgtggtattttttgcatgccttc
gaaggaatggtgacgataatgtgcaatcccgatctcaaaaagatttgtttcaaaaaatgg
aaactgtggtttgtactcgccagtaaacccgaccaacctagaaatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGATGTTCCATCTCTTCGAAGCT 217 655 100 Antisense
TTCGAAGCTCTTTTGGCGTACTCTC 184 695 116 Antisense
TTATTGCACTTTCGCCTTGATTTGT 682 677 168 Antisense
AATCGATTCTTTGCTCTATGGTTTC 396 169 310 Antisense
GTGCGTATGCTTTTGCGCTGTTGAC 262 479 470 Antisense
CATACTTTCTTCTGCCAGGAGTCAT 142 213 494 Antisense
TGATTTTATTGCTTCCGTGGTATTT 304 563 542 Antisense
CGTGGTATTTTTTGCATGCCTTCGA 436 245 557 Antisense
GATAATGTGCAATCCCGATCTCAAA 312 423 594 Antisense
GGAAACTGTGGTTTGTACTCGCCAG 622 527 638 Antisense
TAAACCCGACCAACCTAGAAATGCA 208 639 663 Antisense
Sequence Source Affymetrix Proprietary Database