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[183288_at]

Description T16A1.1 /REP_DB=WormBase Gene ID /WP=CE13704 /TR=P91452 /GB=AAB37880.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 25.4
(3)
A 		17.1
(0.5)
A 		20.3
(1.5)
A 		5.3
(-3)
A 		20
B 45.8
(3)
A 		8.3
(-2.1)
A 		4.7
(-2.6)
A 		2.1
(-3)
A 		44
C 3.8
(-3)
A 		7.3
(1.7)
A 		4
(-2.7)
A 		8.3
(3)
A 		5
avr 25
(3) 		10.9
(-1.3) 		9.7
(-1.6) 		5.2
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 10.5
(-2.3)
A 		37.3
(0.2)
A 		66.6
(3)
A 		12.8
(-2.1)
A 		3.5
(-3)
A 		15
(-1.9)
A 		63
B 2.4
(-2.9)
A 		41.9
(1.8)
A 		52
(3)
A 		29
(0.3)
A 		29.5
(0.3)
A 		1.4
(-3)
A 		51
C 22.7
(-1)
A 		7.3
(-2.7)
A 		24.9
(-0.7)
A 		58.4
(3)
A 		24.1
(-0.8)
A 		4.2
(-3)
A 		54
avr 11.9
(-2.3) 		28.8
(0.2) 		47.8
(3) 		33.4
(0.9) 		19
(-1.2) 		6.9
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.2
(3)
A 		3.7
(-0.9)
A 		5.3
(0.2)
A 		0.8
(-3)
A 		8
B 14.6
(3)
A 		2.1
(-2.3)
A 		1.1
(-2.7)
A 		0.5
(-3)
A 		14
C 1.2
(-3)
A 		2.1
(3)
A 		1.4
(-1.7)
A 		1.4
(-1.7)
A 		1
avr 8.3
(3) 		2.6
(-1.6) 		2.6
(-1.6) 		0.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.9
(-2.6)
A 		13.3
(2.5)
A 		14.5
(3)
A 		3.2
(-2.1)
A 		1.1
(-3)
A 		3.6
(-1.9)
A 		13
B 0.8
(-2.9)
A 		13.9
(3)
A 		12.6
(2.4)
A 		7.7
(0.2)
A 		12
(2.1)
A 		0.5
(-3)
A 		13
C 8.4
(1.1)
A 		2.2
(-2.5)
A 		6.3
(-0.1)
A 		11.7
(3)
A 		7.8
(0.7)
A 		1.4
(-3)
A 		10
avr 3.7
(-1.8) 		9.8
(2.2) 		11.1
(3) 		7.5
(0.7) 		7
(0.4) 		1.8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4303
Sequence Type Exemplar sequence
Representative Public ID T16A1.1 NCBI
Target Description T16A1.1 /REP_DB=WormBase Gene ID /WP=CE13704 /TR=P91452 /GB=AAB37880.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061780(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061780 NCBI Caenorhabditis elegans T16A1.1 (T16A1.1) mRNA, complete cds. 9/11 None
T16A1.1 ENSEMBL cdna:known chromosome:CEL140:II:2098872:2104150:1 gene:T16A1.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2099934-2103737(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16A1.1
Entrez Gene 173566 Entrez gene
WormBase CE37409 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494181 T16A1.1 [Caenorhabditis elegans] 0.0
blast H88065 protein T16A1.1 [imported] - Caenorhabditis elegans 0.0
blast AAB70958 Hypothetical protein C46F9.3 [Caenorhabditis elegans] ref|NP_494116.1| C46F9.3 [Caenorhabditis elegans] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 8.1E-46
Pfam IPR002083 EMBL-EBI MATH 1.1E-30
Pfam IPR002083 EMBL-EBI MATH 3.9E-25
Pfam IPR002083 EMBL-EBI MATH 1.6E-23
Pfam IPR002083 EMBL-EBI MATH 3.4E-29
Sequence
Target Sequence 
>C. ELEGANS:183288_AT
acttccttgcgagattttgccagctgcaaaaagttttacattgtctcacactgtcgcaaa
tatttcaaacatgcgtaaaggaactacatccttcagtaattcagaagagtggaattacgc
tttatggaaagtgtgcttgaagaacaacaacggctttgccgagttattcctgaattgcgg
aaatgagaacagtgagcaagagtcgcggaccgttgaggctaagtatcaactctctcttgt
tggagctggtgggaaacaaatctccgaatttttcgagcacaatttcgagacacccgattc
gaacggggatcctaaagtcatcagatggaaggatatgttggaacagtatgcggtggatga
tagtgtgagaatcgaagctcacgtttcttttacagatgatctaccagctagctccctcgt
aatcaagcatgttgtcgaagaaatttcaaatataaatgaagcagaatataattacagcaa
aaccaaaaaacattgtgaaattccatggttagtatgccaatgtatcacaaatccagtgta
ccctttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCCTTGCGAGATTTTGCCAGCT 628 103 1221 Antisense
GTTTTACATTGTCTCACACTGTCGC 699 447 1253 Antisense
GGAACTACATCCTTCAGTAATTCAG 690 529 1300 Antisense
GCTTTGCCGAGTTATTCCTGAATTG 149 305 1373 Antisense
ACAGTGAGCAAGAGTCGCGGACCGT 329 107 1409 Antisense
GTCGCGGACCGTTGAGGCTAAGTAT 44 473 1422 Antisense
GGCTAAGTATCAACTCTCTCTTGTT 324 539 1437 Antisense
GCACAATTTCGAGACACCCGATTCG 186 317 1497 Antisense
GAATCGAAGCTCACGTTTCTTTTAC 142 329 1589 Antisense
CTAGCTCCCTCGTAATCAAGCATGT 459 225 1628 Antisense
CACAAATCCAGTGTACCCTTTTTCA 219 189 1746 Antisense
Sequence Source Affymetrix Proprietary Database