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[183286_at]

Description C24A8.3 /REP_DB=WormBase Gene ID /WP=CE27080 /TR=P91094 /GB=AAK39181.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 45      6grp_cgc > 81      6grp_cgc_sub > 03      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 91.6
(2.6)
A 		94.9
(3)
A 		44.5
(-3)
A 		68.1
(-0.2)
A 		50
B 146.3
(3)
A 		81.7
(-2.2)
A 		81.2
(-2.3)
A 		72.2
(-3)
A 		74
C 128.5
(3)
A 		97.5
(0.2)
A 		76.9
(-1.7)
A 		62.1
(-3)
A 		66
avr 122.1
(3) 		91.4
(-0.4) 		67.5
(-3) 		67.5
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 80.7
(2.5)
A 		88.1
(3)
A 		58
(0.8)
A 		50.2
(0.2)
A 		6.3
(-3)
A 		16.5
(-2.3)
A 		82
B 60.1
(-0)
A 		28.7
(-2.3)
A 		102.7
(3)
A 		49
(-0.8)
A 		32.1
(-2)
A 		18.5
(-3)
A 		84
C 62.6
(0.1)
A 		35.1
(-2.2)
A 		97.5
(3)
A 		39.8
(-1.8)
A 		26.1
(-3)
A 		57.1
(-0.4)
A 		71
avr 67.8
(1.3) 		50.6
(-0.3) 		86.1
(3) 		46.3
(-0.7) 		21.5
(-3) 		30.7
(-2.1) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 33.4
(3)
A 		20.6
(-0.3)
A 		11.6
(-2.6)
A 		10
(-3)
A 		23
B 46.6
(3)
A 		20.2
(-2.1)
A 		18.8
(-2.3)
A 		15.4
(-3)
A 		31
C 42.5
(3)
A 		28
(0.3)
A 		26.8
(0.1)
A 		10.5
(-3)
A 		32
avr 40.8
(3) 		22.9
(-0.7) 		19.1
(-1.5) 		12
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 14.9
(-0.3)
A 		31.3
(3)
A 		12.6
(-0.8)
A 		12.7
(-0.8)
A 		1.9
(-3)
A 		4
(-2.6)
A 		29
B 20.9
(1.7)
A 		9.5
(-2.1)
A 		24.9
(3)
A 		13
(-1)
A 		13
(-1)
A 		6.9
(-3)
A 		18
C 23.2
(2.4)
A 		10.7
(-2)
A 		24.8
(3)
A 		8
(-3)
A 		8.4
(-2.9)
A 		19.1
(1)
A 		17
avr 19.7
(2.5) 		17.2
(1.3) 		20.8
(3) 		11.2
(-1.4) 		7.8
(-3) 		10
(-2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16037
Sequence Type Exemplar sequence
Representative Public ID C24A8.3 NCBI
Target Description C24A8.3 /REP_DB=WormBase Gene ID /WP=CE27080 /TR=P91094 /GB=AAK39181.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076337
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000036339 ENSEMBL cdna:SNAP chromosome:CEL140:X:4298667:4306935:-1 11/11 None
GENEFINDER00000036351 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4298959:4311740:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076337 5/11 Cross Hyb Matching Probes None
NM_076335 5/11 Cross Hyb Matching Probes A 
C52B9.8 5/11 Cross Hyb Matching Probes A 
C24A8.3 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4302937-4311741(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508736 C52B9.8 [Caenorhabditis elegans] gb|AAK39219.1| Hypothetical protein C52B9.8 [Caenorhabditis elegans] 0.0
blast CAE68557 Hypothetical protein CBG14390 [Caenorhabditis briggsae] 0.0
blast CAA92978 Hypothetical protein F01G4.1 [Caenorhabditis elegans] emb|CAA92768.1| Hypothetical protein F01G4.1 [Caenorhabditis elegans] ref|NP_502082.1| Phasmid Socket Absent family member (psa-4) [Caenorhabditis elegans] gb|AAG16655.1| SWI2/SNF2-like protein; PSA-4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 1.0E-126
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 2.3E-26
Pfam IPR000330 EMBL-EBI SNF2 related domain 1.0E-126
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 2.3E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000036351 1 31-48
Sequence
Target Sequence 
>C. ELEGANS:183286_AT
ggcaccatctcttacgacaaatactttccaccaacaacaacaagcaccaaatggattacc
tccaaataacgctggaccgatgattcagcaagggaagaacattgctggaggttatccacc
aaatcagaataaagtgactcctgggaagaatgtgcccaagaatcagcaacagtcaagacc
gcaacaagccaatgggaaggttcaagcgaaatcttcaccagacttatcgcagccgtcaac
atcaaagcaaagaccaccagcgaacaaggcagatatgacagtaatacgggacgcaattgt
ttcgcatgttaaaggatcaaggaagatgactccagagtatatcgaatacgtgtgtgaaga
gctgaaccgtttgatgcgtgagttggagaaagctgatatgaagacggatcgaagatacat
ctcggttcgcaagttgttggccttgattcaagaggagaagcttacaatcattattccacc
aagaataccaatgcccgcaagatatcctccaactgaagagagtcttggtgacgagccagt
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACCATCTCTTACGACAAATACT 696 535 3318 Antisense
GACAAATACTTTCCACCAACAACAA 338 365 3333 Antisense
AAATCTTCACCAGACTTATCGCAGC 506 117 3526 Antisense
AAGACCACCAGCGAACAAGGCAGAT 126 155 3567 Antisense
GGGACGCAATTGTTTCGCATGTTAA 460 495 3605 Antisense
GAGCTGAACCGTTTGATGCGTGAGT 610 387 3676 Antisense
ATCTCGGTTCGCAAGTTGTTGGCCT 678 31 3736 Antisense
AAGCTTACAATCATTATTCCACCAA 80 151 3775 Antisense
TCCACCAAGAATACCAATGCCCGCA 559 589 3792 Antisense
CCGCAAGATATCCTCCAACTGAAGA 168 263 3812 Antisense
GAGAGTCTTGGTGACGAGCCAGTTG 708 391 3835 Antisense
Sequence Source Affymetrix Proprietary Database