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[183285_at]

Description C26B2.2 /REP_DB=WormBase Gene ID /WP=CE04088 /TR=Q18193 /GB=AAC24258.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 102
(-1.9)
A 		55.2
(-3)
A 		90.3
(-2.2)
A 		307.3
(3)
A 		252
B 88.6
(-1.3)
A 		59.2
(-3)
A 		73.2
(-2.2)
A 		163.9
(3)
A 		105
C 68.8
(-3)
A 		106.1
(-2.1)
A 		81.6
(-2.7)
A 		330.2
(3)
A 		261
avr 86.5
(-2.6) 		73.5
(-3) 		81.7
(-2.7) 		267.1
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 125.4
(-0.7)
A 		87.7
(-2.6)
A 		79
(-3)
A 		89.2
(-2.5)
A 		182.6
(2.1)
A 		200.5
(3)
A 		122
B 95.7
(-1.9)
A 		98.3
(-1.7)
A 		83.7
(-3)
A 		98.4
(-1.7)
A 		149.5
(3)
A 		145.8
(2.7)
A 		66
C 86.4
(-1.9)
A 		148
(2)
A 		68.6
(-3)
A 		110.1
(-0.4)
A 		163.3
(3)
A 		162.8
(3)
A 		95
avr 102.5
(-1.4) 		111.3
(-0.8) 		77.1
(-3) 		99.2
(-1.6) 		165.1
(2.7) 		169.7
(3) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 37.1
(1.6)
A 		12
(-3)
A 		23.6
(-0.9)
A 		45
(3)
A 		33
B 28.2
(1)
A 		14.6
(-3)
A 		17
(-2.3)
A 		34.9
(3)
A 		20
C 22.8
(-3)
A 		30.5
(-1.6)
A 		28.4
(-2)
A 		55.7
(3)
A 		33
avr 29.4
(-0.6) 		19
(-3) 		23
(-2.1) 		45.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 23.1
(-2.1)
A 		31.2
(-0.8)
A 		17.2
(-3)
A 		22.6
(-2.1)
A 		55.1
(3)
A 		48.8
(2)
A 		38
B 33.3
(-1.1)
A 		32.7
(-1.2)
A 		20.3
(-3)
A 		26.1
(-2.1)
A 		60.7
(3)
A 		54.4
(2.1)
A 		40
C 32
(-0.6)
A 		45.2
(1.5)
A 		17.5
(-3)
A 		22.1
(-2.3)
A 		52.9
(2.7)
A 		54.5
(3)
A 		37
avr 29.5
(-1.2) 		36.4
(-0.1) 		18.3
(-3) 		23.6
(-2.2) 		56.2
(3) 		52.6
(2.4) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183285_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9336
Sequence Type Exemplar sequence
Representative Public ID C26B2.2 NCBI
Target Description C26B2.2 /REP_DB=WormBase Gene ID /WP=CE04088 /TR=Q18193 /GB=AAC24258.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068944 NCBI Caenorhabditis elegans C26B2.2 (C26B2.2) mRNA, complete cds. 11/11 None
SNAP00000044203 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8021187:8022773:-1 11/11 None
GENEFINDER00000044207 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8021187:8021977:-1 11/11 None
C26B2.2 ENSEMBL cdna:known chromosome:CEL140:IV:8021187:8021977:-1 gene:C26B2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8021192-8021983(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26B2.2
Entrez Gene 182926 Entrez gene
SwissProt Q18193 EMBL-EBI
WormBase CE04088 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24258 Hypothetical protein C26B2.2 [Caenorhabditis elegans] ref|NP_501345.1| C26B2.2 [Caenorhabditis elegans] 1.0E-96
blast AAC24258 Hypothetical protein C26B2.2 [Caenorhabditis elegans] ref|NP_501345.1| C26B2.2 [Caenorhabditis elegans] 2.0E-92
blast CAA94176 Hypothetical protein ZK930.7 [Caenorhabditis elegans] ref|NP_496543.1| ZK930.7 [Caenorhabditis elegans] 8.0E-37
blast CAA94176 Hypothetical protein ZK930.7 [Caenorhabditis elegans] ref|NP_496543.1| ZK930.7 [Caenorhabditis elegans] 9.0E-37
blast CAE59393 Hypothetical protein CBG02751 [Caenorhabditis briggsae] 1.0E-32
Sequence
Target Sequence 
>C. ELEGANS:183285_AT
cgaatttcccggccaacaagagcttcgacatgacttacaaagtatatcttaaagacttgg
ctgatgcagatgaagaattgacttcctcgagacgcaattccgagttaaatctgactgaaa
acaagccaatcacaatcgcctcgtgtggatttgttcctcaaatgatgtctagttcgactg
tgaaaaacctatcgctttcatcatcggcaactaattttaactcggaaaagtctgagatcg
gatcgaaaatcacgatgaaccctgcaaaacaggttctcaagggtagaaatactcgcaaga
agaggtcaatggtcgacttgtcgcagattaacaagatcttcggaagagactataacccgc
cagctccatcttcaaaatcgccaccgactatttatgtgaacttgggagttatatattctt
cgtcctcttctcacgcttctgatgcttcatccatcagttcccatacgtccgtttcgtcta
cttttaccgaaaagcagcacgaatttggaaaactcgttccatctgggactgacggcagcc
ttgagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAATTTCCCGGCCAACAAGAGCTT 598 253 89 Antisense
TGACTTCCTCGAGACGCAATTCCGA 496 567 167 Antisense
AAACAAGCCAATCACAATCGCCTCG 485 129 207 Antisense
GCCTCGTGTGGATTTGTTCCTCAAA 625 281 226 Antisense
CGCTTTCATCATCGGCAACTAATTT 418 255 281 Antisense
AAATCACGATGAACCCTGCAAAACA 378 117 335 Antisense
AGAGGTCAATGGTCGACTTGTCGCA 278 69 389 Antisense
CGGAAGAGACTATAACCCGCCAGCT 654 241 429 Antisense
AAATCGCCACCGACTATTTATGTGA 681 117 463 Antisense
GGGAGTTATATATTCTTCGTCCTCT 572 495 492 Antisense
CTGGGACTGACGGCAGCCTTGAGTT 654 237 611 Antisense
Sequence Source Affymetrix Proprietary Database