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[183284_at]

Description T16A1.7 /REP_DB=WormBase Gene ID /WP=CE13714 /TR=P91448 /GB=AAB37876.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 18      6grp_cgc > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 36.6
(-0.8)
A 		17.9
(-2.2)
A 		8.1
(-3)
A 		84.8
(3)
A 		77
B 3.6
(-3)
A 		43.9
(3)
A 		24.2
(0.1)
A 		36.5
(1.9)
A 		40
C 21.2
(-3)
A 		75.2
(1.1)
A 		29.5
(-2.4)
A 		99.3
(3)
A 		78
avr 20.5
(-3) 		45.7
(-0.1) 		20.6
(-3) 		73.5
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 8.5
(1)
A 		10.4
(3)
A 		6.6
(-1.1)
A 		4.8
(-3)
A 		8.2
(0.6)
A 		7.4
(-0.2)
A 		6
B 4.8
(-3)
A 		28.3
(3)
A 		7.7
(-2.3)
A 		24.7
(2.1)
A 		5.2
(-2.9)
A 		17.8
(0.3)
A 		24
C 7.4
(-2.4)
A 		34.9
(1.5)
A 		2.8
(-3)
A 		45.8
(3)
A 		5.8
(-2.6)
A 		41.5
(2.4)
A 		43
avr 6.9
(-2.6) 		24.5
(2.8) 		5.7
(-3) 		25.1
(3) 		6.4
(-2.8) 		22.2
(2.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 13.3
(3)
A 		3.9
(-2)
A 		2.1
(-3)
A 		12.4
(2.5)
A 		11
B 1.2
(-3)
A 		10.8
(3)
A 		5.6
(-0.3)
A 		7.8
(1.1)
A 		10
C 7
(-3)
A 		21.6
(3)
A 		10.3
(-1.6)
A 		16.7
(1)
A 		15
avr 7.2
(-1.9) 		12.1
(2.8) 		6
(-3) 		12.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.6
(-2)
A 		3.7
(3)
A 		1.4
(-2.5)
A 		1.2
(-3)
A 		2.5
(0.1)
A 		1.8
(-1.6)
A 		3
B 1.7
(-3)
A 		9.4
(3)
A 		1.9
(-2.8)
A 		6.5
(0.7)
A 		2.1
(-2.7)
A 		6.6
(0.8)
A 		8
C 2.7
(-2.1)
A 		10.6
(1.5)
A 		0.7
(-3)
A 		9.2
(0.9)
A 		1.9
(-2.5)
A 		13.9
(3)
A 		13
avr 2
(-2.4) 		7.9
(3) 		1.3
(-3) 		5.6
(0.9) 		2.2
(-2.2) 		7.4
(2.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183284_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5504
Sequence Type Exemplar sequence
Representative Public ID T16A1.7 NCBI
Target Description T16A1.7 /REP_DB=WormBase Gene ID /WP=CE13714 /TR=P91448 /GB=AAB37876.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061776(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061776 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-66) (pqn-66) mRNA, complete cds. 11/11 None
SNAP00000022089 ENSEMBL cdna:SNAP chromosome:CEL140:II:2085409:2086506:-1 11/11 None
GENEFINDER00000022097 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2085409:2086875:-1 11/11 None
T16A1.7 ENSEMBL cdna:known chromosome:CEL140:II:2085409:2090619:-1 gene:T16A1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2085407-2090618(-) 66.77 96.73
Public Domain and Genome References
Gene Title
Gene Symbol pqn-66
Ensembl T16A1.7
Entrez Gene 188546 Entrez gene
SwissProt P91448 EMBL-EBI
WormBase CE32724 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37876 Prion-like-(q/n-rich)-domain-bearing protein protein 66 [Caenorhabditis elegans] ref|NP_494177.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-66) [Caenorhabditis elegans] 0.0
blast D88065 protein T16A1.7 [imported] - Caenorhabditis elegans 1.0E-113
blast C88065 protein T16A1.6 [imported] - Caenorhabditis elegans 1.0E-100
blast AAC24437 Hypothetical protein W03B1.2 [Caenorhabditis elegans] ref|NP_500541.2| W03B1.2 [Caenorhabditis elegans] 3.0E-88
blast AAB37876 Prion-like-(q/n-rich)-domain-bearing protein protein 66 [Caenorhabditis elegans] ref|NP_494177.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-66) [Caenorhabditis elegans] 5.0E-73
blast AAB37876 Prion-like-(q/n-rich)-domain-bearing protein protein 66 [Caenorhabditis elegans] ref|NP_494177.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-66) [Caenorhabditis elegans] 1.0E-66
blast C88065 protein T16A1.6 [imported] - Caenorhabditis elegans 1.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494177.2 6 283-305,312-329,357-379,392-414,439-461,513-535
T16A1.7 6 283-305,312-329,357-379,392-414,439-461,513-535
GENEFINDER00000022097 2 13-35,73-95
Sequence
Target Sequence 
>C. ELEGANS:183284_AT
aaatgctccaaatgcccaaaatagcaaagatgatgcaaatgctcaaaatgcacaaaatga
ccaaaatgctccaaacgatgcaaatggccagaatgtacaaattgacagaaatgattcaaa
tgcccaaaatggccaaaatgctccaaatgaccaaaatgctcaaaatgatccaaatgctca
aaatgctccaaatgtccagaattctcaaaatactagaaatgctcaaaattctcagaatgc
ccagaatgcccgaaatgctccaaatgctcagattgcacaaaatgatcctaatgctccaaa
tgctcagattgcacaaaatgctccaaatgctcaaaatgatataaatgctccaaatgtcca
aaatgctcaaaaagctccaaatgctcaaaatgcacaagagcaacaagaggcacaggccaa
ggaacttgaaaaggaaattgggcagtttttatgcaagaggtcatttggcgtcctggaagg
actgatggatcttgtcggcggtttcgagaagcacacactcgatgtgagcacgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCTCCAAATGCCCAAAATAGC 295 119 2409 Antisense
TGCTCCAAACGATGCAAATGGCCAG 618 581 2475 Antisense
GATTCAAATGCCCAAAATGGCCAAA 328 431 2521 Antisense
TCTCAGAATGCCCAGAATGCCCGAA 273 613 2638 Antisense
CCAGAATGCCCGAAATGCTCCAAAT 265 273 2649 Antisense
ACAAAATGATCCTAATGCTCCAAAT 480 111 2685 Antisense
AAGAGCAACAAGAGGCACAGGCCAA 329 153 2804 Antisense
GCAAGAGGTCATTTGGCGTCCTGGA 127 319 2861 Antisense
GGACTGATGGATCTTGTCGGCGGTT 448 517 2887 Antisense
GTCGGCGGTTTCGAGAAGCACACAC 25 473 2902 Antisense
GCACACACTCGATGTGAGCACGCTG 532 315 2919 Antisense
Sequence Source Affymetrix Proprietary Database