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[183283_at]

Description ZC239.5 /REP_DB=WormBase Gene ID /WP=CE15120 /TR=P91557 /GB=AAB37944.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 13      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 7.1
(-2.6)
A 		32.3
(3)
A 		5.5
(-3)
A 		19.9
(0.2)
A 		27
B 42.5
(1.6)
A 		5.5
(-3)
A 		8.2
(-2.7)
A 		53.3
(3)
A 		48
C 24.2
(1.4)
A 		7.7
(-3)
A 		26.2
(1.9)
A 		30.4
(3)
A 		23
avr 24.6
(0.2) 		15.2
(-2.5) 		13.3
(-3) 		34.5
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 5.5
(-3)
A 		18.4
(-1.5)
A 		58.1
(3)
A 		7.8
(-2.7)
A 		6.9
(-2.8)
A 		8.9
(-2.6)
A 		53
B 3
(-3)
A 		32.5
(3)
A 		13.6
(-0.8)
A 		31.3
(2.8)
A 		3.1
(-3)
A 		6.4
(-2.3)
A 		30
C 4.4
(-2.7)
A 		8.7
(-2)
A 		40.5
(3)
A 		6.1
(-2.4)
A 		2.3
(-3)
A 		5.8
(-2.5)
A 		38
avr 4.3
(-3) 		19.9
(-0.2) 		37.4
(3) 		15.1
(-1) 		4.1
(-3) 		7
(-2.5) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.6
(-1.7)
A 		7
(3)
A 		1.4
(-3)
A 		2.9
(-1.4)
A 		6
B 13.6
(3)
A 		1.4
(-3)
A 		1.9
(-2.8)
A 		11.3
(1.9)
A 		12
C 8
(2)
A 		2.2
(-3)
A 		9.1
(3)
A 		5.1
(-0.5)
A 		7
avr 8.1
(3) 		3.5
(-3) 		4.1
(-2.2) 		6.4
(0.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1
(-3)
A 		6.6
(-0.1)
A 		12.7
(3)
A 		2
(-2.5)
A 		2.1
(-2.4)
A 		2.2
(-2.4)
A 		12
B 1
(-3)
A 		10.8
(3)
A 		3.3
(-1.6)
A 		8.3
(1.5)
A 		1.2
(-2.9)
A 		2.4
(-2.1)
A 		10
C 1.6
(-2.4)
A 		2.7
(-1.8)
A 		10.3
(3)
A 		1.2
(-2.7)
A 		0.7
(-3)
A 		1.9
(-2.3)
A 		10
avr 1.2
(-3) 		6.7
(1.3) 		8.8
(3) 		3.8
(-0.9) 		1.3
(-2.9) 		2.2
(-2.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4817
Sequence Type Exemplar sequence
Representative Public ID ZC239.5 NCBI
Target Description ZC239.5 /REP_DB=WormBase Gene ID /WP=CE15120 /TR=P91557 /GB=AAB37944.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062074 NCBI Caenorhabditis elegans ZC239.5 (ZC239.5) mRNA, complete cds. 11/11 None
SNAP00000024294 ENSEMBL cdna:SNAP chromosome:CEL140:II:3212366:3213110:1 10/11 None
GENEFINDER00000024307 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3212366:3213273:1 11/11 None
ZC239.5 ENSEMBL cdna:known chromosome:CEL140:II:3212366:3213147:1 gene:ZC239.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3212364-3213146(+) 97.24 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC239.5
Entrez Gene 191122 Entrez gene
SwissProt P91557 EMBL-EBI
WormBase CE15120 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37944 Hypothetical protein ZC239.5 [Caenorhabditis elegans] ref|NP_494475.1| ZC239.5 [Caenorhabditis elegans] 4.0E-95
blast AAB37944 Hypothetical protein ZC239.5 [Caenorhabditis elegans] ref|NP_494475.1| ZC239.5 [Caenorhabditis elegans] 5.0E-95
blast AAB37944 Hypothetical protein ZC239.5 [Caenorhabditis elegans] ref|NP_494475.1| ZC239.5 [Caenorhabditis elegans] 2.0E-85
blast NP_494318 F22E5.12 [Caenorhabditis elegans] gb|AAB66176.1| Hypothetical protein F22E5.12 [Caenorhabditis elegans] 3.0E-25
blast NP_494318 F22E5.12 [Caenorhabditis elegans] gb|AAB66176.1| Hypothetical protein F22E5.12 [Caenorhabditis elegans] 5.0E-25
blast NP_494318 F22E5.12 [Caenorhabditis elegans] gb|AAB66176.1| Hypothetical protein F22E5.12 [Caenorhabditis elegans] 7.0E-25
blast AAB37942 Hypothetical protein ZC239.3 [Caenorhabditis elegans] ref|NP_494477.1| ZC239.3 [Caenorhabditis elegans] 2.0E-24
blast AAB37942 Hypothetical protein ZC239.3 [Caenorhabditis elegans] ref|NP_494477.1| ZC239.3 [Caenorhabditis elegans] 3.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.4E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494475.1 1 170-189
ZC239.5 1 170-189
Sequence
Target Sequence 
>C. ELEGANS:183283_AT
gagttctccactactgaagcgactctcactaagttcgagggatatttcaagcagaaatta
aagactcgtggaaagatttggcaaactactctattcattgaccgctccccaacacatttt
gagataatattaaatttcatgagagatgggaaggtggatcttccagaaactcttaaagaa
ctgatgccaatattccgggagacggagtactatacgttggccagtttagttgaacaatgt
ggaggagcaattgcaagtttgggtggtggcccggaatttgataagtttcgaggaattatt
ccaactgaagctgttgtttcaatcaataacagtgacgttgacaataatcaagtagaagtt
ggaaactactacgtgaattatatcagagcggcaacatatgatagatttatgaaatggaaa
aactcctcaaagacggagcaatatgctgagcaggaagataccccttcgacaatgttttgg
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTCTCCACTACTGAAGCGACTC 312 397 52 Antisense
GAAGCGACTCTCACTAAGTTCGAGG 501 343 67 Antisense
AAGTTCGAGGGATATTTCAAGCAGA 92 155 82 Antisense
AAGATTTGGCAAACTACTCTATTCA 65 157 124 Antisense
CCGCTCCCCAACACATTTTGAGATA 269 263 153 Antisense
CTGATGCCAATATTCCGGGAGACGG 508 239 232 Antisense
GACGGAGTACTATACGTTGGCCAGT 673 373 252 Antisense
TACGTTGGCCAGTTTAGTTGAACAA 82 647 264 Antisense
GCAAGTTTGGGTGGTGGCCCGGAAT 162 317 304 Antisense
GCTGAGCAGGAAGATACCCCTTCGA 641 293 496 Antisense
GATACCCCTTCGACAATGTTTTGGA 213 425 508 Antisense
Sequence Source Affymetrix Proprietary Database